Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
BBa_K729003BBa_K729003 Version 1 (Component)csgBAEFG operon
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
BBa_K322123BBa_K322123 Version 1 (Component)Phycobilin synthesis operon without terminator
BBa_I746104BBa_I746104 Version 1 (Component)P2 promoter in agr operon from S. aureus
Operon2BBa_K808007 Version 1 (Component)putative terephtalate uptake operon2
BBa_K729018BBa_K729018 Version 1 (Component)J23119 - RBS - csgBAEFG
BBa_K729017BBa_K729017 Version 1 (Component)pT7 - RBS - csgBAEFG
BBa_K909000BBa_K909000 Version 1 (Component)Phycocyanobilin synthesis operon
BBa_K1404001BBa_K1404001 Version 1 (Component)Ptac-NiCoTB-rcn-csgBAEFG, turns E. coli into a functional Ni and Co biofilter
BBa_K1499000BBa_K1499000 Version 1 (Component)wssF gene from wss operon
BBa_K540000BBa_K540000 Version 1 (Component)<i>rcn-csgBAEFG</i>, over-induces adherence in response to cobalt
hycApBBa_K778000 Version 1 (Component)hycAp: Promoter of hyc operon activated by FhlA
PrFeBBa_J3902 Version 1 (Component)PrFe (PI + PII rus operon)
BBa_K769020BBa_K769020 Version 1 (Component)lux operon(K769011) + lumP(K769019)
BBa_K769022BBa_K769022 Version 1 (Component)lux operon(K769011) + GFP(I13522)
BBa_K1795024BBa_K1795024 Version 1 (Component)KanR Operon under R0010
BBa_K822000BBa_K822000 Version 1 (Component)lldPRD operon promoter + RBS from E. coli
BBa_K804005BBa_K804005 Version 1 (Component)DszC coding gene (from DszABC operon)
BBa_K1897037BBa_K1897037 Version 1 (Component)Modified lldPRD operon promoter
BBa_K325909BBa_K325909 Version 1 (Component)Lux Operon (under pBAD)<BR><i>Vibrio Fischeri</i>
BBa_K1497007BBa_K1497007 Version 1 (Component)Naringenin producing operon
BBa_K769011BBa_K769011 Version 1 (Component)Promoter(Pbad)-RBS-lux operon-DT
BBa_K902024BBa_K902024 Version 1 (Component)moa Operon (MoaABCDE)
BBa_K223051BBa_K223051 Version 1 (Component)5MT operon (promoter-operator)
BBa_K1583112BBa_K1583112 Version 1 (Component)pRha + CsgA & GFP in same operon
BBa_K377701BBa_K377701 Version 1 (Component)Flu operon/ Ag43
XylRBBa_K143036 Version 1 (Component)Xylose operon regulatory protein
BBa_K274003BBa_K274003 Version 1 (Component)Vio operon ABDE
ColE2BBa_K131000 Version 1 (Component)ColE2 Operon
BBa_M33001BBa_M33001 Version 1 (Component)Nar operon promoter (narGp) => PoPs
BBa_K150007BBa_K150007 Version 1 (Component)ColicinE1 operon
BBa_K150010BBa_K150010 Version 1 (Component)ColicinE9 operon
nrdPBBa_K847211 Version 1 (Component)nrd operon promoter
BBa_K322122BBa_K322122 Version 1 (Component)Phycocyanobilin synthesis operon
BBa_J64822BBa_J64822 Version 1 (Component)P.aeruginosa phz operon activator
BBa_K1779100BBa_K1779100 Version 1 (Component)Magnetosome mamCD operon and mms6 operon
BBa_J64600BBa_J64600 Version 1 (Component)lac operon
BBa_K131027BBa_K131027 Version 1 (Component)ColE3 operon