Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxrBBa_C0062 Version 1 (Component)luxR repressor/activator, (no LVA?)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K779129BBa_K779129 Version 1 (Component)d1 - In vitro NOT gate MammoBlock
BBa_K779128BBa_K779128 Version 1 (Component)c3 - In vitro NOT gate MammoBlock
BBa_K779131BBa_K779131 Version 1 (Component)e - In vitro NOT gate MammoBlock
BBa_K779123BBa_K779123 Version 1 (Component)a - In vitro NOT gate MammoBlock
BBa_K779130BBa_K779130 Version 1 (Component)d2 - In vitro NOT gate MammoBlock
BBa_K779124BBa_K779124 Version 1 (Component)b1 - In vitro NOT gate MammoBlock
BBa_K779125BBa_K779125 Version 1 (Component)b2 - In vitro NOT gate MammoBlock
BBa_K779126BBa_K779126 Version 1 (Component)c1 - In vitro NOT gate MammoBlock
BBa_K779127BBa_K779127 Version 1 (Component)c2 - In vitro NOT gate MammoBlock
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
BBa_K779200BBa_K779200 Version 1 (Component)Hef1A MammoBlock
Pnot(O55)BBa_I732205 Version 1 (Component)NOT Gate Promoter Family Member (D001O55)
BBa_K415506BBa_K415506 Version 1 (Component)pTRE-Tight L4R1 MammoBlock
Restriction_sitesRestriction_sites Version 1 (Component)SacI - KpnI - SmaI - BamHI - XbaI - SalI - PstI - SphI - HindIII - NotI
lasRBBa_C0179 Version 1 (Component)lasR activator from P. aeruginosa PAO1(no LVA)
BBa_K511003BBa_K511003 Version 1 (Component)UAS-Gal4 Promoter MammoBlock
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K415508BBa_K415508 Version 1 (Component)phEF1a L4R1 MammoBlock Entry Vector
BBa_M36125BBa_M36125 Version 1 (Component)d1 (RNA scaffold)
Pnot(O11)BBa_I732201 Version 1 (Component)NOT Gate Promoter Family Member (D001O11)
Pnot(O1wt1BBa_I732200 Version 1 (Component)NOT Gate Promoter Family Member (D001O1wt1)
D1BBa_K1884005 Version 1 (Component)PsbA
BBa_M36009BBa_M36009 Version 1 (Component)5' Bicistronic UTR (strong), does not include ATG start
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_K511102BBa_K511102 Version 1 (Component)mKate MammoBlock
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
Pnot(O33)BBa_I732203 Version 1 (Component)NOT Gate Promoter Family Member (D001O33)
Pnot(O66)BBa_I732206 Version 1 (Component)NOT Gate Promoter Family Member (D001O66)
Pnot(O44)BBa_I732204 Version 1 (Component)NOT Gate Promoter Family Member (D001O44)
Pnot(O22)BBa_I732202 Version 1 (Component)NOT Gate Promoter Family Member (D001O22)
Pnot(O77)BBa_I732207 Version 1 (Component)NOT Gate Promoter Family Member (D001O77)
D1BBa_K1830009 Version 1 (Component)Dock1
BBa_K1363603BBa_K1363603 Version 1 (Component)gate of no of RNA logic gates
BBa_K2101000BBa_K2101000 Version 1 (Component)Heme D1 biosynthesis
rhIRBBa_C0171 Version 1 (Component)rhlR repressor/activator from P. aeruginosa PA3477 (no LVA)
weakest NOBBa_I732353 Version 1 (Component)NOT Gate Promoter Family Member (D001O17)
BBa_K511100BBa_K511100 Version 1 (Component)EBFP2 MammoBlock
BBa_K511000BBa_K511000 Version 1 (Component)Hef1a-LacOid Promoter MammoBlock
BBa_K779503BBa_K779503 Version 1 (Component)Long input strand MammoBlock