iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
GFPBBa_E0040 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
BBa_K1632005BBa_K1632005 Version 1 (Component)fim switch[default OFF](wild-type)
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
BBa_K1632008BBa_K1632008 Version 1 (Component)fim switch[default OFF](wild-type)_rbs_gfp
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_K1632011BBa_K1632011 Version 1 (Component)fimE (wild-type)
BBa_K1632001BBa_K1632001 Version 1 (Component)fim switch[default OFF](Tokyo_Tech/J23119)
BBa_K1632010BBa_K1632010 Version 1 (Component)fimB (wild-type)
BBa_E0044BBa_E0044 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212)
BBa_K1632004BBa_K1632004 Version 1 (Component)fim switch[default ON](wild-type)
BBa_K1632000BBa_K1632000 Version 1 (Component)fim switch[deault ON](Tokyo_Tech/J23119)
BBa_K1632003BBa_K1632003 Version 1 (Component)fim switch[default OFF](Tokyo_Tech/J23119)_rbs_gfp
BBa_K1632006BBa_K1632006 Version 1 (Component)fim switch[default ON](Tokyo_Tech/R0010)
BBa_K1632007BBa_K1632007 Version 1 (Component)fim switch[default ON](wild-type)_rbs_gfp
BBa_K082004BBa_K082004 Version 1 (Component)LacI- wild type
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
fimE IRLBBa_K137010 Version 1 (Component)fimE IRL
BBa_K1632018BBa_K1632018 Version 1 (Component)J23100_rbs_lasR_TT_Plux_rbs_fimE(wild-type)
IRRBBa_K137008 Version 1 (Component)fimE IRR
BBa_K1799006BBa_K1799006 Version 1 (Component)LsrB (wild type)
BBa_K1799004BBa_K1799004 Version 1 (Component)LsrC (wild type)
BBa_K1632012BBa_K1632012 Version 1 (Component)PBAD/araC_rbs_fimB(wild-type)
BBa_K1632013BBa_K1632013 Version 1 (Component)PBAD/araC_rbs_fimE(wild-type)
BBa_K1632031BBa_K1632031 Version 1 (Component)fim switch[default OFF](Tokyo_Tech/J23119)_rbs_gfp_rbs_rhlI
BBa_K1632033BBa_K1632033 Version 1 (Component)fim switch[default OFF](Tokyo_Tech/J23119)_rbs_gfp_rbs_lasI
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
BBa_K091121BBa_K091121 Version 1 (Component)LacI wild-type gene
BBa_K1632002BBa_K1632002 Version 1 (Component)fim switch[default ON](Tokyo_Tech/J23119)_rbs_gfp
BBa_K1632030BBa_K1632030 Version 1 (Component)fim switch[default ON](Tokyo_Tech/J23119)_rbs_gfp_rbs_rhlI
BBa_K1632032BBa_K1632032 Version 1 (Component)fim switch[default ON](Tokyo_Tech/J23119)_rbs_gfp_rbs_lasI
TetR(B)BBa_I12202 Version 1 (Component)Wild-type TetR(B) (-LVA)
BBa_K611016BBa_K611016 Version 1 (Component)LacI Repressor and Promoter Wild Type Control