Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
BBa_B0010BBa_B0010 Version 1 (Component)T1 from E. coli rrnB
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
lacIBBa_C0012 Version 1 (Component)lacI repressor from E. coli (+LVA)
cI lamBBa_C0051 Version 1 (Component)cI repressor from E. coli phage lambda (+LVA)
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
AbrBBO_9091 Version 1 (Component) SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
BBa_K2186002BBa_K2186002 Version 1 (Component)gRNA targeting AcrB in E. Coli BL21(DE3)
BBa_K2186001BBa_K2186001 Version 1 (Component)gRNA targeting AcrA in E. Coli BL21(DE3)
BBa_K2186000BBa_K2186000 Version 1 (Component)gRNA targeting TolC in E. Coli BL21(DE3)
BBa_J70029BBa_J70029 Version 1 (Component)RBS + mCherry gene, optimized for expression in Me. florum and E. coli
PelBBBa_J32015 Version 1 (Component)PelB leader sequence; directs protein to E. coli periplasmic membrane
HisTagBBa_J18909 Version 1 (Component)His tag (6xHis; E. coli - optimized)
BBa_K1393003BBa_K1393003 Version 1 (Component)outer membrane porin protein C from Escherichia coli BL21(DE3)
sacBBBa_K322921 Version 1 (Component)B. subtilis levansucrase. Lethal to E. coli in presence of sucrose.
BBa_K731722BBa_K731722 Version 1 (Component)T1 terminator from E. coli rrnB
BBa_J33201BBa_J33201 Version 1 (Component)E. coli chromosomal ars promoter with arsR repressor gene
preSCsiteBBa_J18919 Version 1 (Component)preScission protease cleavage site (E. coli-optimized)
BBa_I746200BBa_I746200 Version 1 (Component)FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane.
BBa_K1393002BBa_K1393002 Version 1 (Component)cyn operon in Escherichia coli BL21(DE3) (cynR+cynT+cynS)
BBa_K115002BBa_K115002 Version 1 (Component)RNA thermometer (FourU)
BBa_K912001BBa_K912001 Version 1 (Component)E. coli phytase (appa phytase)
BBa_K1487001BBa_K1487001 Version 1 (Component)Guide RNA (gRNA) target for acfB
BBa_K115001BBa_K115001 Version 1 (Component)RNA thermometer (ROSE)
TEVsiteBBa_J18918 Version 1 (Component)TEV cleavage site (E. coli)
BBa_I2032BBa_I2032 Version 1 (Component)T7 RNA polymerase
BBa_K953004BBa_K953004 Version 1 (Component)Hemeoxygenase with RBS (E. coli Codon Optimised)
BBa_K1172901BBa_K1172901 Version 1 (Component)Alanine racemase from ''E. coli''
BBa_K863006BBa_K863006 Version 1 (Component)ecol laccase from E. coli
BBa_J70024BBa_J70024 Version 1 (Component)TetM gene, recoded compromise E. coli & Mesoplasma florum
ssrA(DAS+4BBa_K1075020 Version 1 (Component)E. coli ssrA(DAS+4)
BBa_M1716BBa_M1716 Version 1 (Component)Hepcidin Optimized for E. coli
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K733001BBa_K733001 Version 1 (Component)<i>Ptms</i> - a constitutive promoter in <i>E. coli</i> and <i>B. subtilis</i>.
BBa_K523001BBa_K523001 Version 1 (Component)RBS + malS (E. coli periplasmic α-amylase)
BBa_K523002BBa_K523002 Version 1 (Component)RBS + bglX (E. coli perisplasmic β-glucosidase)
BBa_K953002BBa_K953002 Version 1 (Component)Agrobacterium tumefaciens Bacteriophytochrome with RBS (E. coli Codon Optimised)
MarABBa_K1230000 Version 1 (Component)AcrAB-TolC multidrug efflux transport system activator from E. coli
Cse1BBa_K1218003 Version 1 (Component)CRISPR CasA E. coli (Modern)
InteinBBa_K300004 Version 1 (Component)Engineered pH-inducible intein (codon optimized for E. coli) - internal domain
BBa_K258005BBa_K258005 Version 1 (Component)Oxygen promoter-Vitreoscilla hemoglobin(VHb) promoter in E. coli.
LacYBBa_K079015 Version 1 (Component)LacY transporter protein from E. coli
BBa_K1403010BBa_K1403010 Version 1 (Component)RBS for agaA in E coli