Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
ATGATG Version 1 (Component) pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
BBa_K258010BBa_K258010 Version 1 (Component)Human Epidermal growth factor (hEGF)
BBa_K2152000BBa_K2152000 Version 1 (Component)human Epidermal Growth Factor(hEGF) with His-tag
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_K2152001BBa_K2152001 Version 1 (Component)human Epidermal Growth Factor(hEGF) with FLAG-tag
BBa_J04031BBa_J04031 Version 1 (Component)GFP w/LVA tag
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
HisTagBBa_J18909 Version 1 (Component)His tag (6xHis; E. coli - optimized)
HABBa_I712008 Version 1 (Component)HA affinity tag
NLSBBa_J176008 Version 1 (Component)NLS
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
PESTBBa_J176018 Version 1 (Component)PEST
BBa_J64101BBa_J64101 Version 1 (Component)ColE1 biobrick plasmid with backward terminator
BBa_K1781001BBa_K1781001 Version 1 (Component)HER2 (Human Epidermal Growth Factor 2) cytoplasmic domain
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
BBa_K258004BBa_K258004 Version 1 (Component)Keratinocyte growth factor (KGF)
BBa_J04051BBa_J04051 Version 1 (Component)RFP with tag
NLSmycSTOPBBa_J176031 Version 1 (Component)NLS myc stop
BBa_K1189009BBa_K1189009 Version 1 (Component)Beta-lactamase with His Tag
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
BBa_K929202BBa_K929202 Version 1 (Component)EGF-Receptor_3rd domain with PelB leadersequence, His-tag and C-terminal Sortase motif
BBa_P10598BBa_P10598 Version 1 (Component)GoldenBraid destination vector omega insert
BBa_P10599BBa_P10599 Version 1 (Component)GoldenBraid destination vector alpha insert
BBa_K249008BBa_K249008 Version 1 (Component)YFP with N-terminal Arganine Tag
BBa_K249006BBa_K249006 Version 1 (Component)Fusion EYFP with C-terminal Arginine Tag
BBa_K1321338BBa_K1321338 Version 1 (Component)T7 Expression vector
BBa_K2170210BBa_K2170210 Version 1 (Component)Epidermal growth factor receptor transmembrane domain (EGFR TMD) in RFC[25]
BBa_J09855BBa_J09855 Version 1 (Component)Constitutive luxR device with pLuxR
HinBBa_J31000 Version 1 (Component)DNA-invertase Hin from Salmonella typhimurium
BBa_K228000BBa_K228000 Version 1 (Component)T7ptag(T7polymerase with amber mutation)
BBa_K654058BBa_K654058 Version 1 (Component)Thioesterase (TesA from E. coli) with 8-His Tag
BBa_J70048BBa_J70048 Version 1 (Component)6his part for use with BioScaffold parts ATG-GGATCC (glycine serine)-6 His-TAA
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS