SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_K1366004BBa_K1366004 Version 1 (Component)lpp 50 bp homology (2)
BBa_K1366003BBa_K1366003 Version 1 (Component)lpp 50 bp homology
BBa_K1366008BBa_K1366008 Version 1 (Component)50 bp lpp homology (1)
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
BBa_B0029BBa_B0029 Version 1 (Component)1 bp deletion from B0031
GlpPBO_11205 Version 1 (Component) BBa_K199106BBa_K199106 Version 1 (Component)pLpp promoter
BBa_K315014BBa_K315014 Version 1 (Component)TetA (Optimized from bp 1 to 141)
BBa_K315015BBa_K315015 Version 1 (Component)TetA gene (DeOptimized from bp 1 to 141)
BBa_K1489002BBa_K1489002 Version 1 (Component)Lpp-OmpA-Linker (pSB1C3)
SYFP2BBa_K864100 Version 1 (Component)Super Yellow Fluorescent Protein 2 (SYFP2)
BBa_J100046BBa_J100046 Version 1 (Component)lpp+tRNA CCAUC (10 bp anticodon loop)
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_K115056BBa_K115056 Version 1 (Component)IPP -> OPP or DMAPP -> OPP
BBa_K137047BBa_K137047 Version 1 (Component)250 bp inverted tetR promoter
BBa_K117002BBa_K117002 Version 1 (Component)LsrA promoter (indirectly activated by AI-2)
lcpBBa_I716101 Version 1 (Component)Low Copy Ampicillin Resistance Plasmid
BBa_K1763442BBa_K1763442 Version 1 (Component)MaSp1/2[1:2]-12(1C3)
BBa_K1763438BBa_K1763438 Version 1 (Component)MaSp1/2[2:1]-12(1C3)
BBa_K195401BBa_K195401 Version 1 (Component)Lpp-OmpA-linker -F10scFv
BBa_K115055BBa_K115055 Version 1 (Component)Mevalonate-PP -> IPP
BBa_K079019BBa_K079019 Version 1 (Component)Lac 2 - operator library member
BBa_K1231002BBa_K1231002 Version 1 (Component)Lpp-RBS is a constitutive promoter
BBa_K1921018BBa_K1921018 Version 1 (Component)LPP-OmpA+linker.a
BBa_J36846BBa_J36846 Version 1 (Component)Lpp-OmpA(46-159)-Streptavidin wild-type + His6
BBa_K1991004BBa_K1991004 Version 1 (Component)Lpp-OmpA-BamHI
BBa_K137046BBa_K137046 Version 1 (Component)150 bp inverted tetR promoter
BBa_K1763439BBa_K1763439 Version 1 (Component)MaSp1/2[2:1]-12(T7)
BBa_K1763443BBa_K1763443 Version 1 (Component)MaSp1/2[1:2]-12(T7)
Lin-2BO_9115 Version 1 (Component) BBa_K137058BBa_K137058 Version 1 (Component)GFP fimE switch with 250 bp tetR promoter
"Eye 2"BBa_K1080011 Version 1 (Component)ChlI2
2/3GlyBBa_K1362467 Version 1 (Component)other 2/3Gly
BBa_K199008BBa_K199008 Version 1 (Component)CCAUC Suppressor tRNA (10-bp Anticodon and Produces Serine)
BBa_K1015011BBa_K1015011 Version 1 (Component)lacI-homology sequence
glpPBO_31152 Version 1 (Component) BBa_K137049BBa_K137049 Version 1 (Component)450 bp inverted tetR promoter