Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
lux pRBBa_R0062 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pR)
luxrBBa_C0062 Version 1 (Component)luxR repressor/activator, (no LVA?)
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
lux pLBBa_R0063 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pL)<br>
cI+luxRBBa_R0065 Version 1 (Component)Promoter (lambda cI and luxR regulated -- hybrid)
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
LuxRBBa_I0462 Version 1 (Component)luxR Protein Generator
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
BBa_C0261BBa_C0261 Version 1 (Component)AHL-making Enzyme, luxI (+RBS)
BBa_K546000BBa_K546000 Version 1 (Component)Lux pL controlled LuxR with lux pR autoinducing LuxI(lva tag)- AHL.
lux pRBBa_R1062 Version 1 (Component)Promoter, Standard (luxR and HSL regulated -- lux pR)<br>
loxBBa_J61046 Version 1 (Component)[Lox] site for recombination
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
BBa_J09855BBa_J09855 Version 1 (Component)Constitutive luxR device with pLuxR
pLux/TetBBa_K176000 Version 1 (Component)pLux/Tet Hybrid Promoter: (LuxR+,TetR-)->PoPS
BBa_K176028BBa_K176028 Version 1 (Component)TetR repressible AHL->PoPS Receiver (Very High LuxR): pCon 0.70->luxR+pLux/Tet->PoPS
BBa_K546003BBa_K546003 Version 1 (Component)Lux pL controlled LuxR + lux pR promoter.
BBa_K769020BBa_K769020 Version 1 (Component)lux operon(K769011) + lumP(K769019)
BBa_K769022BBa_K769022 Version 1 (Component)lux operon(K769011) + GFP(I13522)
BBa_K325909BBa_K325909 Version 1 (Component)Lux Operon (under pBAD)<BR><i>Vibrio Fischeri</i>
BBa_K228011BBa_K228011 Version 1 (Component)LuxR-LuxP-SupD
luxRBBa_R0061 Version 1 (Component)Promoter (HSL-mediated luxR repressor)
BBa_K769011BBa_K769011 Version 1 (Component)Promoter(Pbad)-RBS-lux operon-DT
BBa_K091146BBa_K091146 Version 1 (Component)pLas/Lux Hybrid Promoter
BBa_K769021BBa_K769021 Version 1 (Component)lux operon(K769011) + luxY(K360100)
lucBBa_K389004 Version 1 (Component)Luciferase from pGL4.10[luc2]
BBa_K322123BBa_K322123 Version 1 (Component)Phycobilin synthesis operon without terminator
BBa_I746104BBa_I746104 Version 1 (Component)P2 promoter in agr operon from S. aureus
BBa_K176085BBa_K176085 Version 1 (Component)cell density->PoPS: pCon 0.15->luxI-LVA+pCon 0.70->luxR+pLux/Tet->PoPS
LuxR/PBBa_I13201 Version 1 (Component)Natural Lux Promoter Preceded by LuxR
BBa_K182200BBa_K182200 Version 1 (Component)Constitutively expressed LuxR/LuxI operon
Operon2BBa_K808007 Version 1 (Component)putative terephtalate uptake operon2
BBa_K1725212BBa_K1725212 Version 1 (Component)LuxA + Lux B with B0032
BBa_K1893004BBa_K1893004 Version 1 (Component)Lux receiver (LuxR+pLux)
BBa_K116634BBa_K116634 Version 1 (Component)RBS + LuxR + RBS + LuxI + T
BBa_K176087BBa_K176087 Version 1 (Component)cell density->PoPS: pCon 0.01->luxI-LVA+pCon 0.70->luxR+pLux/Tet->PoPS
BBa_K176084BBa_K176084 Version 1 (Component)cell density->PoPS: pCon 0.36->luxI-LVA+pCon 0.70->luxR+pLux/Tet->PoPS
BBa_K176086BBa_K176086 Version 1 (Component)cell density->PoPS: pCon 0.04->luxI-LVA+pCon 0.70->luxR+pLux/Tet->PoPS
BBa_K176083BBa_K176083 Version 1 (Component)cell density->PoPS: pCon 0.70->luxI-LVA+pCon 0.70->luxR+pLux/Tet->PoPS
BBa_J28031BBa_J28031 Version 1 (Component)lux autoinducer
IR-GFPBBa_K658016 Version 1 (Component)LuxI->LuxR->lux pR->GFP