ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

BBa_K624004
BBa_K624004 Version 1 (Component)
ori+Pmsp1+rep (pYMB essentials)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria

BBa_K624000
BBa_K624000 Version 1 (Component)
ori+Pmsp1

BBa_K624028
BBa_K624028 Version 1 (Component)
pYMB+rbs (Pmsp3) (expression vector essentials on Magnetospirillum magneticum AMB-1)

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

RBS-RFP
BBa_K093005 Version 1 (Component)
RFP with RBS

BBa_K624058
BBa_K624058 Version 1 (Component)
pYMB essentials + RBS(Pmsp3) + Inv

BBa_K624056
BBa_K624056 Version 1 (Component)
pYMB essentials + RBS(Pmsp3) + minC

BBa_K624057
BBa_K624057 Version 1 (Component)
pYMB essentials + RBS(Pmsp3) + LLO

BBa_K624021
BBa_K624021 Version 1 (Component)
pYMBG (rbs: Pmsp3) essentials

BBa_K624055
BBa_K624055 Version 1 (Component)
pYMB essentials + RBS(Pmsp3) + tetR + RBS(Pmsp3) + GFP

BBa_K081014
BBa_K081014 Version 1 (Component)
RFP protein generator - PoPS->RFP

BBa_K624022
BBa_K624022 Version 1 (Component)
pYMBG (rbs: trunc. Pmsp3) essentials

f1 ori
BBa_K314110 Version 1 (Component)
f1 origin

BBa_K624029
BBa_K624029 Version 1 (Component)
pYMB+rbs (Pmsp3, 6 bps trunc.) (expression vector essentials on Magnetospirillum magneticum AMB-1)

BBa_K624012
BBa_K624012 Version 1 (Component)
RBS from Pmsp3

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

mRFPr
BBa_J31008 Version 1 (Component)
RFP reverse

BBa_K624020
BBa_K624020 Version 1 (Component)
pYMB essentials+[13-R]

BBa_K624045
BBa_K624045 Version 1 (Component)
Pmsp1(tetO) + RBS(Pmsp3) + minC + RBS(Pmsp3) + mcherry

BBa_K624062
BBa_K624062 Version 1 (Component)
pYMB essentials + RBS(trunc.) + Inv

BBa_K624024
BBa_K624024 Version 1 (Component)
pYMB essentials+[YN-13-R]

BBa_K624023
BBa_K624023 Version 1 (Component)
pYMB essentials+[Y-13-R]

BBa_K624061
BBa_K624061 Version 1 (Component)
pYMB essentials + RBS(trunc.) + LLO

BBa_K624060
BBa_K624060 Version 1 (Component)
pYMB essentials + RBS(trunc.) + minC

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

Pmsp3
BBa_K1947001 Version 1 (Component)
Pmsp3

BBa_K624017
BBa_K624017 Version 1 (Component)
pYMB essentials+[Y-13-R]+[CHAMP]

BBa_K624019
BBa_K624019 Version 1 (Component)
pYMB essentials+[13-R]+[Y-CHAMP]

BBa_K199118
BBa_K199118 Version 1 (Component)
T7 promoter + RBS + RFP

BBa_K624018
BBa_K624018 Version 1 (Component)
pYMB essentials+[YN-13-R]+[YC-CHAMP]

BBa_K624031
BBa_K624031 Version 1 (Component)
pYMB essentials+[YN-13-R]+[CHAMP-YC]

RFP2
BBa_I715023 Version 1 (Component)
Carboxyl portion of RFP