SynBioHub

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

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BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

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BBa_K117002
BBa_K117002 Version 1 (Component)
LsrA promoter (indirectly activated by AI-2)

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BBa_K1799000
BBa_K1799000 Version 1 (Component)
pLsrA-2

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BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

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BBa_K117008
BBa_K117008 Version 1 (Component)
pLsrA-YFP

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BBa_K649105
BBa_K649105 Version 1 (Component)
PlsrA-gfp-PlsrR-lsrR

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BBa_K876068
BBa_K876068 Version 1 (Component)
Term-Term-pLsrA-LacI

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BBa_K1666000
BBa_K1666000 Version 1 (Component)
LsrA of LuxS/AI-2 signaling pathway in Salmonalla

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SYFP2
BBa_K864100 Version 1 (Component)
Super Yellow Fluorescent Protein 2 (SYFP2)

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BBa_K1114107
BBa_K1114107 Version 1 (Component)
Bicistronic Design RBS 2, MoClo Format with BC fusion sites

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BBa_K649104
BBa_K649104 Version 1 (Component)
PlsrA-RBS-gfp

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BBa_K1659501
BBa_K1659501 Version 1 (Component)
pLsr + RBS + sfGFP

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BBa_K1096004
BBa_K1096004 Version 1 (Component)
pLsrA

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BBa_K1799011
BBa_K1799011 Version 1 (Component)
LsrA RBS

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BBa_K117010
BBa_K117010 Version 1 (Component)
pLsrA-celE7-double Terminator

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BBa_K1763442
BBa_K1763442 Version 1 (Component)
MaSp1/2[1:2]-12(1C3)

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BBa_K1763438
BBa_K1763438 Version 1 (Component)
MaSp1/2[2:1]-12(1C3)

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BBa_K091170
BBa_K091170 Version 1 (Component)
plsrA/cI+E0240(GFP)

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BBa_K1230008
BBa_K1230008 Version 1 (Component)
rbs-GFP-Terminator- pLsrA

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BBa_K876054
BBa_K876054 Version 1 (Component)
plsrA-lacI

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BBa_K091140
BBa_K091140 Version 1 (Component)
plsrA/cI+RBS+luxI

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BBa_K1486020
BBa_K1486020 Version 1 (Component)
rLuc[2]

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BBa_K517005
BBa_K517005 Version 1 (Component)
erg20-2

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BBa_K649101
BBa_K649101 Version 1 (Component)
PlsrR-lsrR

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BBa_K1230012
BBa_K1230012 Version 1 (Component)
rbs-GFP-terminator-pLsrA-LL37

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BBa_K079019
BBa_K079019 Version 1 (Component)
Lac 2 - operator library member

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BBa_K091106
BBa_K091106 Version 1 (Component)
LsrA/cI hybrid promoter

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BBa_K1763439
BBa_K1763439 Version 1 (Component)
MaSp1/2[2:1]-12(T7)

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BBa_K1763443
BBa_K1763443 Version 1 (Component)
MaSp1/2[1:2]-12(T7)

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BBa_K1486007
BBa_K1486007 Version 1 (Component)
IFP[2]

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Lin-2
BO_9115 Version 1 (Component)

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BBa_K1981001
BBa_K1981001 Version 1 (Component)
lsrA

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BBa_K649106
BBa_K649106 Version 1 (Component)
PlsrA-gfp-PlacIQ-lsrR-lsrK

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Plsr
BBa_K1145004 Version 1 (Component)
Take effect when the density of bacteria hits certain value.

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"Eye 2"
BBa_K1080011 Version 1 (Component)
ChlI2

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2/3Gly
BBa_K1362467 Version 1 (Component)
other 2/3Gly

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BBa_K091142
BBa_K091142 Version 1 (Component)
plsrA/cI+RBS+luxI+RBS+Mnt+TT

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BBa_K500001
BBa_K500001 Version 1 (Component)
lignin degradation 2

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Lock 2
BBa_J01011 Version 1 (Component)
Riboregulator Lock 2

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Key 2
BBa_J01009 Version 1 (Component)
Riboregulator Key 2

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BBa_K091116
BBa_K091116 Version 1 (Component)
LsrA Promoter

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BBa_K1399007
BBa_K1399007 Version 1 (Component)
GFP (mut3b) with SsrA-DAS+2 degradation tag

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BBa_K203111
BBa_K203111 Version 1 (Component)
Constitutive promoter; 2 REU

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BBa_K1763440
BBa_K1763440 Version 1 (Component)
MaSp1/2[1:1]-12(1C3)

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BBa_K876064
BBa_K876064 Version 1 (Component)
plsrA-luxI-RBS-YFP-Term-term

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BBa_I13513
BBa_I13513 Version 1 (Component)
Screening Plasmid 2

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BBa_K1659500
BBa_K1659500 Version 1 (Component)
pLsr + RBS + sfGFP

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