SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pBad/araCBBa_I0500 Version 1 (Component)Inducible pBad/araC promoter
BBa_I13453BBa_I13453 Version 1 (Component)Pbad promoter
BBa_B1001BBa_B1001 Version 1 (Component)Terminator (artifical, small, %T~=90)
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
IBMc180IBMc180 Version 1 (Component)pSB1A3-BbsI-10aa-acVHH-T-cat-PBAD(SapI)-RiboJ-BCD22-acVHH-10aa-SapI
pBADBBa_K206000 Version 1 (Component)pBAD strong
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_B1006BBa_B1006 Version 1 (Component)Terminator (artificial, large, %T~>90)
IBMc190IBMc190 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B33-ECF20(1-101)-10aa-acVHH-T-cat-PBAD(SapI-)-RiboJ-BCD22-acVHH-10aa-ECF20(102-193)-T
Restriction_sitesRestriction_sites Version 1 (Component)SacI - KpnI - SmaI - BamHI - XbaI - SalI - PstI - SphI - HindIII - NotI
IBMc191IBMc191 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B33-ECF20(1-101)-15aa-acVHH-T-cat-PBAD(SapI-)-RiboJ-BCD22-acVHH-15aa-ECF20(102-193)-T
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
IBMc397IBMc397 Version 1 (Component)pSB3K3-TT-PBAD(SapI-)-B30-His-acVHH-15aa-T7RNAP(181+)-T
IBMc360IBMc360 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry(1-192)-G-M86(1-100)-10aa-acVHH-T-cat-PBAD(SapI-)-RiboJ-BCD1-acVHH-10aa-M86(101-154)-S-mCherry(193-236)-H6-T
IBMc188IBMc188 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B33-ECF20(1-101)-2aa-acVHH-T-cat-PBAD(SapI-)-RiboJ-BCD22-acVHH-2aa-ECF20(102-193)-T
IBMc189IBMc189 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B33-ECF20(1-101)-5aa-acVHH-T-cat-PBAD(SapI-)-RiboJ-BCD22-acVHH-5aa-ECF20(102-193)-T
IBMc378IBMc378 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-192)-G-M86(1-17)-PI-10aa-acVHH-T-cat-PBAD(SapI-)-RiboJ-BCD1-acVHH-10aa-M86(18-154)-S-mCherry*(193-236)-H6-T
IBMc379IBMc379 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-192)-G-M86(1-22)-LG-10aa-acVHH-T-cat-PBAD(SapI-)-RiboJ-BCD1-acVHH-10aa-M86(23-154)-S-mCherry*(193-236)-H6-T
IBMc380IBMc380 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-192)-G-M86(1-39)-LD-10aa-acVHH-T-cat-PBAD(SapI-)-RiboJ-BCD1-acVHH-10aa-M86(40-154)-S-mCherry*(193-236)-H6-T
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
IBMc396IBMc396 Version 1 (Component)pSEVA321-PBAD(SapI-)-B30-His-T7RNAP(29-1)-15aa-acVHH-T
IBMc233IBMc233 Version 1 (Component)pSB1A3-BbsI-M86N-T-cat-PPhlF-RiboJ-B32-M86C-SapI
CatBBa_I14033 Version 1 (Component)P(Cat)
IBMc335IBMc335 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-192)-GAEY-e-NpuNcage-acVHH-T-cat-PBAD(SapI-)-RiboJ-BCD1-acVHH-NpuCcage-CFNS-mCherry*(193-236)-H6-Ter
5xGSBBa_J18922 Version 1 (Component)10aa [GS]x linker
IBMc187IBMc187 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B33-ECF20(1-101)-T-cat-PBAD(SapI-)-RiboJ-BCD22-ECF20(102-193)-T
IBMc395IBMc395 Version 1 (Component)pSB3K3-TT-PBAD(SapI-)-B30-His-FKBP-14aa-T7RNAP(181+)-T
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
IBMc050IBMc050 Version 1 (Component)pSB1A3-BbsI-M86N-cat-Plux2-B32-M86C-SapI
IBMc394IBMc394 Version 1 (Component)pSEVA321-PBAD(SapI-)-B30-His-T7RNAP(29-1)-14aa-FRB-T
IBMc460IBMc460 Version 1 (Component)pSB1A3-BbsI-GY-gp-41-1N-cat-PPhlF-RiboJ-B32-gp41-1C-SS-SapI
IBMc318IBMc318 Version 1 (Component)pSB1A3-BbsI-G-ER-LBD-S-SapI
pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
IBMc071IBMc071 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B33-ECF20-T
IBMc052IBMc052 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*-T
IBMc471IBMc471 Version 1 (Component)pSB1A3-PBAD(SapI-)-B30-mCherry*(1-173)-Ter
IBMc473IBMc473 Version 1 (Component)pSB1A3-PBAD(SapI-)-B30-mCherry*(1-185)-Ter
IBMc470IBMc470 Version 1 (Component)pSB1A3-PBAD(SapI-)-B30-mCherry*(1-156)-Ter
IBMc469IBMc469 Version 1 (Component)pSB1A3-PBAD(SapI-)-B30-mCherry*(1-121)-Ter
IBMc472IBMc472 Version 1 (Component)pSB1A3-PBAD(SapI-)-B30-mCherry*(1-176)-Ter
IBMc475IBMc475 Version 1 (Component)pSB1A3-PBAD(SapI-)-B30-mCherry*(1-192)-Ter
IBMc474IBMc474 Version 1 (Component)pSB1A3-PBAD(SapI-)-B30-mCherry*(1-191)-Ter