SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
IBMc050IBMc050 Version 1 (Component)pSB1A3-BbsI-M86N-cat-Plux2-B32-M86C-SapI
IBMc233IBMc233 Version 1 (Component)pSB1A3-BbsI-M86N-T-cat-PPhlF-RiboJ-B32-M86C-SapI
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
CatBBa_I14033 Version 1 (Component)P(Cat)
IBMc383IBMc383 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-156)-PDG-M86N-cat-Plux2-B32-M86C-S-mCherry*(157-236)-H6-T
IBMc401IBMc401 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-191)-VHG-M86N-cat-Plux2-B32-M86C-S-mCherry*(192-236)-H6-T
IBMc399IBMc399 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-188)-KNG-M86N-cat-Plux2-B32-M86C-S-mCherry*(189-236)-H6-T
IBMc384IBMc384 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-158)-DGG-M86N-cat-Plux2-B32-M86C-S-mCherry*(159-236)-H6-T
IBMc398IBMc398 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-187)-ANG-M86N-cat-Plux2-B32-M86C-S-mCherry*(188-236)-H6-T
IBMc386IBMc386 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-171)-LNG-M86N-cat-Plux2-B32-M86C-S-mCherry*(172-236)-H6-T
IBMc403IBMc403 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-194)-PGG-M86N-cat-Plux2-B32-M86C-S-mCherry*(195-236)-H6-T
IBMc400IBMc400 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-190)-PVG-M86N-cat-Plux2-B32-M86C-S-mCherry*(191-236)-H6-T
IBMc402IBMc402 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-192)-QLG-M86N-cat-Plux2-B32-M86C-S-mCherry*(193-236)-H6-T
IBMc382IBMc382 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-121)-EFG-M86N-cat-Plux2-B32-M86C-S-mCherry*(122-236)-H6-T
IBMc389IBMc389 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-176)-HYG-M86N-cat-Plux2-B32-M86C-S-mCherry*(177-236)-H6-T
IBMc385IBMc385 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-160)-ALG-M86N-cat-Plux2-B32-M86C-S-mCherry*(161-236)-H6-T
IBMc381IBMc381 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-159)-GAG-M86N-cat-Plux2-B32-M86C-S-mCherry*(160-236)-H6-T
IBMc388IBMc388 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-174)-GGG-M86N-cat-Plux2-B32-M86C-S-mCherry*(175-236)-H6-T
IBMc387IBMc387 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-173)-DGG-M86N-cat-Plux2-B32-M86C-S-mCherry*(174-236)-H6-T
IBMc390IBMc390 Version 1 (Component)pSB3T5(BsaI-)-PBAD(SapI-)-B30-mCherry*(1-185)-YNG-M86N-cat-Plux2-B32-M86C-S-mCherry*(186-236)-H6-T
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
IBMc065IBMc065 Version 1 (Component)pSB3T5(BsaI-)-PBAD-B30-mCherry*(1-159)-GAG-M86N-cat-Plux2-B32-M86C-S-mCherry*(160-236)-T
Restriction_sitesRestriction_sites Version 1 (Component)SacI - KpnI - SmaI - BamHI - XbaI - SalI - PstI - SphI - HindIII - NotI
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
IBMc460IBMc460 Version 1 (Component)pSB1A3-BbsI-GY-gp-41-1N-cat-PPhlF-RiboJ-B32-gp41-1C-SS-SapI
BBa_J09855BBa_J09855 Version 1 (Component)Constitutive luxR device with pLuxR
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
IBMc180IBMc180 Version 1 (Component)pSB1A3-BbsI-10aa-acVHH-T-cat-PBAD(SapI)-RiboJ-BCD22-acVHH-10aa-SapI
pSB1A1pSB1A1 Version 1 (Component)pUC19 with a BioBrick cloning site (Replaced by pSB1A3)
IBMc318IBMc318 Version 1 (Component)pSB1A3-BbsI-G-ER-LBD-S-SapI
ScreeningpSB1A10 Version 1 (Component)Screening Plasmid v1.0
pSB1AC3pSB1AC3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A7pSB1A7 Version 1 (Component)Transcriptionally insulated high copy BioBrick plasmid
IBMc411IBMc411 Version 1 (Component)pSEVA321-PBAD(SapI-)-B30-SrpR(1-116)-LIG-M86N-T
IBMc404IBMc404 Version 1 (Component)pSEVA321-PBAD(SapI-)-B30-SrpR(1-52)-NGG-M86N-T
IBMc413IBMc413 Version 1 (Component)pSEVA321-PBAD(SapI-)-B30-SrpR(1-170)-LRG-M86N-T
IBMc412IBMc412 Version 1 (Component)pSEVA321-PBAD(SapI-)-B30-SrpR(1-169)-GLG-M86N-T
IBMc416IBMc416 Version 1 (Component)pSEVA321-PBAD(SapI-)-B30-SrpR(1-176)-QAG-M86N-T
IBMc409IBMc409 Version 1 (Component)pSEVA321-PBAD(SapI-)-B30-SrpR(1-111)-LDG-M86N-T
IBMc406IBMc406 Version 1 (Component)pSEVA321-PBAD(SapI-)-B30-SrpR(1-75)-PDG-M86N-T