ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

pSB1C3
pSB1C3 Version 1 (Component)
High copy BioBrick assembly plasmid

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

pSB1AT3
pSB1AT3 Version 1 (Component)
High copy BioBrick assembly plasmid

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

pSB1A2
pSB1A2 Version 1 (Component)
pSB1A2 (Replaced by pSB1A3)

BBa_K2146003
BBa_K2146003 Version 1 (Component)
pWH1266 ori-specR-pSB1C3

pSB1AK3
pSB1AK3 Version 1 (Component)
High copy BioBrick assembly plasmid

pSB1K3
pSB1K3 Version 1 (Component)
High copy BioBrick assembly plasmid

pSB1A3
pSB1A3 Version 1 (Component)
High copy BioBrick assembly plasmid

pSB1AC3
pSB1AC3 Version 1 (Component)
High copy BioBrick assembly plasmid

pSB1T3
pSB1T3 Version 1 (Component)
High copy BioBrick assembly plasmid

pSB4C1
pSB4C1 Version 1 (Component)
pCK01 converted into BioBrick vector (formerly BBa_I739202)

pSB1C4
pSB1C4 Version 1 (Component)
High copy BioBrick assembly plasmid

BBa_K2146001
BBa_K2146001 Version 1 (Component)
pWH1266 ori-pSB1C3

pSB3K3
pSB3K3 Version 1 (Component)
Low to medium copy BioBrick standard vector

pSB4A3
pSB4A3 Version 1 (Component)
pSB4A3 (Replaced by pSB4A5)

pSB2K3
pSB2K3 Version 1 (Component)
Inducible copy number BioBrick plasmid

pSB1A1
pSB1A1 Version 1 (Component)
pUC19 with a BioBrick cloning site (Replaced by pSB1A3)

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

pSB1A7
pSB1A7 Version 1 (Component)
Transcriptionally insulated high copy BioBrick plasmid

pSB1AC0
pSB1AC0 Version 1 (Component)
pSB1AC0

pSB6C5
pSB6C5 Version 1 (Component)
pBR322 Derived Chloramphenicol Backbone

pSB3C5
pSB3C5 Version 1 (Component)
Low to medium copy BioBrick standard vector

pSB4C5
pSB4C5 Version 1 (Component)
Low copy BioBrick standard vector

f1 ori
BBa_K314110 Version 1 (Component)
f1 origin

BBa_K2146004
BBa_K2146004 Version 1 (Component)
pWH1266 ori-Ptac-lacOc-ampC ADC-33-pSB1C3

BBa_K624004
BBa_K624004 Version 1 (Component)
ori+Pmsp1+rep (pYMB essentials)

BBa_K2146006
BBa_K2146006 Version 1 (Component)
pWH1266 ori-Ptac-lacOc-ampC ADC-33-T1-lacI-PT5-gusA-T2-pSB1C3

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

BBa_K2146005
BBa_K2146005 Version 1 (Component)
pWH1266 ori-Ptac-lacOc-aph(3')-VIa

pSB1A2
BBa_K300988 Version 1 (Component)
pSB1A2 without Prefix and Suffix

BBa_K1489002
BBa_K1489002 Version 1 (Component)
Lpp-OmpA-Linker (pSB1C3)

BBa_K624000
BBa_K624000 Version 1 (Component)
ori+Pmsp1

BBa_J61205
BBa_J61205 Version 1 (Component)
[SpecR][P_T7][Tn5R]

BBa_J61209
BBa_J61209 Version 1 (Component)
[SpecR][OriTr][TnP]