ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

P(Lac) IQ
BBa_I14032 Version 1 (Component)
promoter P(Lac) IQ

OmpR
BBa_R0082 Version 1 (Component)
Promoter (OmpR, positive)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K864400
BBa_K864400 Version 1 (Component)
Ptac, trp & lac regulated promoter

lac Or2-62
BBa_I12210 Version 1 (Component)
plac Or2-62 (positive)

OmpR
BBa_R0084 Version 1 (Component)
Promoter (OmpR, positive)

pLac
BBa_K1638000 Version 1 (Component)
Lac operator

OmpR
BBa_R0083 Version 1 (Component)
Promoter (OmpR, positive)

BBa_K314103
BBa_K314103 Version 1 (Component)
Lac induced expression cassette

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_J33207
BBa_J33207 Version 1 (Component)
lac promoter and lacZ

BBa_I715039
BBa_I715039 Version 1 (Component)
pLac-RBS-RFP

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

f1 ori
BBa_K314110 Version 1 (Component)
f1 origin

BBa_K1443001
BBa_K1443001 Version 1 (Component)
Lambda Repressor OR3-OR2-OR1-pR

BBa_K1443002
BBa_K1443002 Version 1 (Component)
Lambda Repressor OR1-OR2-OR3-pRM

pLac+cI
BBa_I763005 Version 1 (Component)
cI repressor (+LVA) regulated by pLac Promoter

BBa_K208010
BBa_K208010 Version 1 (Component)
Lac Promoter (BBa_R0010) and RBS (B0034)

BBa_J24743
BBa_J24743 Version 1 (Component)
62. 34(BBa_J24714)==44(BBa_J24724)

BBa_K1813037
BBa_K1813037 Version 1 (Component)
ptac and RBS

pLac ColE2
BBa_K914001 Version 1 (Component)
pLac Colicin E2 Immunity protein

BBa_K876000
BBa_K876000 Version 1 (Component)
pLac-TetR

BBa_J31013
BBa_J31013 Version 1 (Component)
pLac Backwards [cf. BBa_R0010]

BBa_K091146
BBa_K091146 Version 1 (Component)
pLas/Lux Hybrid Promoter

BBa_J22101
BBa_J22101 Version 1 (Component)
Lac Y gene

PT5lac
BBa_K592008 Version 1 (Component)
T5-lac Promoter

BBa_K876011
BBa_K876011 Version 1 (Component)
pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI

BBa_I715040
BBa_I715040 Version 1 (Component)
pLac-RBS-RFP-RBS-GFP

sfGFP_T65C
BBa_K1362170 Version 1 (Component)
Split sfGFP reconstitution positive control

BBa_K1713000
BBa_K1713000 Version 1 (Component)
Plac/ara-1, a hybrid promoter

BBa_J24773
BBa_J24773 Version 1 (Component)
91. 62(BBa_J24743) == 55(BBa_J24735)

BBa_K624004
BBa_K624004 Version 1 (Component)
ori+Pmsp1+rep (pYMB essentials)