ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1150010
BBa_K1150010 Version 1 (Component)
NLS

BBa_J85801
BBa_J85801 Version 1 (Component)
rtTa3-2A-NLS-mKate2

BBa_J85901
BBa_J85901 Version 1 (Component)
Hef1a-B1-rtTA3-2A-NLS-mKate2

NLS
BBa_J176008 Version 1 (Component)
NLS

NLSmycSTOP
BBa_J176031 Version 1 (Component)
NLS myc stop

NLS+Term
BBa_K165018 Version 1 (Component)
SV40 nuclear localization sequence + ADH1 transcription terminator

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K2100006
BBa_K2100006 Version 1 (Component)
pENTR mKate

BBa_K2050421
BBa_K2050421 Version 1 (Component)
Thosea Asigna Virus 2A peptide linker (T2A)

BBa_K779312
BBa_K779312 Version 1 (Component)
mKate-HH - Hammerhead attached behind mKate MammoBlock

BBa_I712022
BBa_I712022 Version 1 (Component)
T7 RNA polymerase with NLS

BBa_K511102
BBa_K511102 Version 1 (Component)
mKate MammoBlock

BBa_K511203
BBa_K511203 Version 1 (Component)
rtTA3 Tetracycline-Inducible Transactivator MammoBlock

BBa_I712069
BBa_I712069 Version 1 (Component)
RBS-T7 RNA polymerase with NLS

BBa_K511911
BBa_K511911 Version 1 (Component)
Inducible rtTA Transactivator Generator (TRE-Tight-rtTA3) MammoBlock Device

BBa_K779305
BBa_K779305 Version 1 (Component)
rtTA3 MammoBlock

BBa_K779311
BBa_K779311 Version 1 (Component)
HH-mKate - Hammerhead attached to front of mKate MammoBlock

BBa_K1316000
BBa_K1316000 Version 1 (Component)
mKate2 protein

TNY2AKUB
BBa_K076000 Version 1 (Component)
pLV-TRE-Ngn1-linker-EYFP-2A-mKate-Ubc-Bla

BBa_K076005
BBa_K076005 Version 1 (Component)
2A linker

BBa_K929001
BBa_K929001 Version 1 (Component)
AID without NES, with NLS and Kozak sequence

BBa_K511902
BBa_K511902 Version 1 (Component)
rtTA3 Transactivator Generator (Hef1a-rtTA3) MammoBlock Device

BBa_P10401
BBa_P10401 Version 1 (Component)
Nos

BBa_K1980007
BBa_K1980007 Version 1 (Component)
pCusC mKate2

BBa_K076006
BBa_K076006 Version 1 (Component)
mKate

BBa_K1055000
BBa_K1055000 Version 1 (Component)
mKate is a fluorophor derived from dsRed

BBa_K1362057
BBa_K1362057 Version 1 (Component)
NLS as RFC[105] N-terminal insert

BBa_K1179022
BBa_K1179022 Version 1 (Component)
CAG_Acyl-TyA-rtTA3

ATA-rtTA3
BBa_K1179004 Version 1 (Component)
(Acyl-TyA-rtTA3) A membrane/exosome targeting rtTA3 fusion to send through exosomes

BBa_K511914
BBa_K511914 Version 1 (Component)
Inducible rtTA3 Transactivator Generator (UAS-Gal4-rtTA3) MammoBlock Device

BBa_J72121
BBa_J72121 Version 1 (Component)
{-NLS!}

BBa_K2040122
BBa_K2040122 Version 1 (Component)
KillerRed + NLS

BBa_K1316001
BBa_K1316001 Version 1 (Component)
mKate2 protein with double transcription terminator

BBa_K1547009
BBa_K1547009 Version 1 (Component)
Cas9 NLS

BBa_K2100025
BBa_K2100025 Version 1 (Component)
pENTR rtTA

BBa_K1965022
BBa_K1965022 Version 1 (Component)
nLuc:AP4:TEVs:P3mS-2A