SynBioHub

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

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BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

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sRNA_cassette
sRNA_cassette Version 1 (Component)

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sRNA_target
sRNA_target Version 1 (Component)

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BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

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BBa_K228001
BBa_K228001 Version 1 (Component)
SupD-tRNA

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BBa_K115002
BBa_K115002 Version 1 (Component)
RNA thermometer (FourU)

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BBa_K115001
BBa_K115001 Version 1 (Component)
RNA thermometer (ROSE)

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BBa_I2032
BBa_I2032 Version 1 (Component)
T7 RNA polymerase

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SYFP2
BBa_K864100 Version 1 (Component)
Super Yellow Fluorescent Protein 2 (SYFP2)

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BBa_K1114107
BBa_K1114107 Version 1 (Component)
Bicistronic Design RBS 2, MoClo Format with BC fusion sites

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BBa_K1017404
BBa_K1017404 Version 1 (Component)
sRNA-2

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BBa_K117002
BBa_K117002 Version 1 (Component)
LsrA promoter (indirectly activated by AI-2)

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BBa_K1763442
BBa_K1763442 Version 1 (Component)
MaSp1/2[1:2]-12(1C3)

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BBa_K1763438
BBa_K1763438 Version 1 (Component)
MaSp1/2[2:1]-12(1C3)

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BBa_K1017402
BBa_K1017402 Version 1 (Component)
sRNA+rRBS-2

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BBa_K738002
BBa_K738002 Version 1 (Component)
Theophyline riboswitch regulated RNA Scaffold (clover vision 2)

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BBa_K1368011
BBa_K1368011 Version 1 (Component)
Spinach Aptamer 13-2 RNA with Stabilizing tRNA Scaffold

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BBa_K1486020
BBa_K1486020 Version 1 (Component)
rLuc[2]

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BBa_K517005
BBa_K517005 Version 1 (Component)
erg20-2

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BBa_K1473002
BBa_K1473002 Version 1 (Component)
gRNA 2

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BBa_K115003
BBa_K115003 Version 1 (Component)
RNA thermometer (PrfA)

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BBa_K1323006
BBa_K1323006 Version 1 (Component)
sRNA (2): YFP-targeting molecule

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BBa_K079019
BBa_K079019 Version 1 (Component)
Lac 2 - operator library member

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BBa_K313025
BBa_K313025 Version 1 (Component)
as RNA 2

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ONBY RS
BBa_K1416000 Version 1 (Component)
The tRNA synthetase/tRNA needed for incorporating o-(2-nitrobenzyl)-L-tyrosine (ONBY) at a UAG codon

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BBa_K1941007
BBa_K1941007 Version 1 (Component)
sgRNA c6_TDH3 (2)

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BBa_K1763439
BBa_K1763439 Version 1 (Component)
MaSp1/2[2:1]-12(T7)

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BBa_K1763443
BBa_K1763443 Version 1 (Component)
MaSp1/2[1:2]-12(T7)

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BBa_K1633001
BBa_K1633001 Version 1 (Component)
MOR siRNA 2

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BBa_I1023
BBa_I1023 Version 1 (Component)
CI(2) IS10 asRNA

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BBa_I1063
BBa_I1063 Version 1 (Component)
CI(2) IS10 asRNA

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BBa_K1486007
BBa_K1486007 Version 1 (Component)
IFP[2]

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Lin-2
BO_9115 Version 1 (Component)

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BBa_K1795100
BBa_K1795100 Version 1 (Component)
TracR gRNA

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BBa_K1473018
BBa_K1473018 Version 1 (Component)
gRNA for tetR 2

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BBa_K1473007
BBa_K1473007 Version 1 (Component)
gRNA for ampR 2

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"Eye 2"
BBa_K1080011 Version 1 (Component)
ChlI2

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BBa_K1799000
BBa_K1799000 Version 1 (Component)
pLsrA-2

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2/3Gly
BBa_K1362467 Version 1 (Component)
other 2/3Gly

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BBa_K500001
BBa_K500001 Version 1 (Component)
lignin degradation 2

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Y taRNA
BBa_K606034 Version 1 (Component)
Tyrosine amber supressor tRNA

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BBa_K199045
BBa_K199045 Version 1 (Component)
CUACC tRNA Suppressor (Produces Serine)

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Lock 2
BBa_J01011 Version 1 (Component)
Riboregulator Lock 2

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BBa_K779106
BBa_K779106 Version 1 (Component)
Output 2 - mRNA domain 2 DNA sensor MammoBlock

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BBa_K779104
BBa_K779104 Version 1 (Component)
Fuel 2 - mRNA domain 2 DNA sensor MammoBlock

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BBa_K779105
BBa_K779105 Version 1 (Component)
Gate 2 - mRNA domain 2 DNA sensor MammoBlock

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Key 2
BBa_J01009 Version 1 (Component)
Riboregulator Key 2

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