SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
MpAAT1BBa_K395602 Version 1 (Component)Apple fragrance generator
BBa_T1008BBa_T1008 Version 1 (Component)Example part
BBa_M1152BBa_M1152 Version 1 (Component)Example
BBa_K417007BBa_K417007 Version 1 (Component)Simple inducible (LacI) ethylene generator
BBa_K226801BBa_K226801 Version 1 (Component)An example reporter
BBa_J329000BBa_J329000 Version 1 (Component)Simple lux-based QS system
BBa_M45996BBa_M45996 Version 1 (Component)composite example
BBa_T1005BBa_T1005 Version 1 (Component)Improved Part Example
BBa_J329003BBa_J329003 Version 1 (Component)Simple Quorum Sensing System Expressing YFP
BBa_K499580BBa_K499580 Version 1 (Component)LucC example gene
BBa_M45108BBa_M45108 Version 1 (Component)RBS phasin example
BBa_K395600BBa_K395600 Version 1 (Component)Apple fragrance enzyme (MpAAT1) generator
BBa_K2082010BBa_K2082010 Version 1 (Component)Nanobody: Example binding protein
BBa_K2082009BBa_K2082009 Version 1 (Component)Monobody: Example binding protein
BBa_T9900BBa_T9900 Version 1 (Component)J04450 Test Example
BBa_I719007BBa_I719007 Version 1 (Component)vanilla scent synthesizer (example)
BBa_J329001BBa_J329001 Version 1 (Component)Simple lux-based QS circuit expressing untagged GFP
BBa_I731003BBa_I731003 Version 1 (Component)protein generator (EXAMPLE ONLY)
BBa_K1621002BBa_K1621002 Version 1 (Component)Glycoprotein G1 (Herpes simplex type1)
BBa_I731002BBa_I731002 Version 1 (Component)b4312 fimbrae E. coli PRACTICE EXAMPLE ONLY
BBa_K1583112BBa_K1583112 Version 1 (Component)pRha + CsgA & GFP in same operon
BBa_J70031BBa_J70031 Version 1 (Component)Linker for BioScaffold Parts, example of Gamma BioScaffold part
BBa_J329006BBa_J329006 Version 1 (Component)Simple QS Circuit with GFP Controlled by LuxR Promoter
BBa_I731000BBa_I731000 Version 1 (Component)OmpA [Escherichia coli APEC O1] PRACTICE EXAMPLE ONLY
BBa_I731001BBa_I731001 Version 1 (Component)OmpA [Escherichia coli APEC O1] PRACTICE EXAMPLE ONLY
BBa_K1217010BBa_K1217010 Version 1 (Component)Localizing PPK1 into Simple Eut Microcompartment (encoded by EutS gene only)
BBa_K251000BBa_K251000 Version 1 (Component)coding sequene for E.coli heat shock protein hsp15 (example/ european meeting)
BBa_K603001BBa_K603001 Version 1 (Component)mitochondrial proteorhodopsin WZK (same as K603000)
BBa_J04085BBa_J04085 Version 1 (Component)"On" Antiswitch and target EYFP in the same plasmid
BBa_J04086BBa_J04086 Version 1 (Component)"Off" Antiswitch and target EYFP in the same plasmid
BBa_K1479002BBa_K1479002 Version 1 (Component)Testing twins mechanism, same as BBa_B0014, no practical purpose
BBa_J24822BBa_J24822 Version 1 (Component)Same as J24819 but with the error at the luc-terminator junction fixed
BBa_K880003BBa_K880003 Version 1 (Component)Asymmetrically digestible reporter, same orientation of inverted repeats as K137058 (external sites
pLacIQ1-RBBBa_K193406 Version 1 (Component)the coding is the same as BBa_193404 the back bone is changed onto pSB6A1
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K603002BBa_K603002 Version 1 (Component)same as BBa_K603000 except in pSB1C3 vector
BBa_J24823BBa_J24823 Version 1 (Component)same as J24819 but with ACCACC Euk RBS removed and problem solved via J24822 removed
SEGASEGA_collection Version 1 (Collection)In the Standardized Genome Architecture (SEGA), genomic integration of DNA fragments is enabled by λ-Red recombineering and so-called landing pads that are a common concept in synthetic biology and typically contain features that i) enable insertion of additional genetic elements and ii) provide well-characterized functional parts such as promoters and genes, and iii) provides insulation against genome context-dependent effects. The SEGA landing pads allow for reusable homology regions and time-efficient construction of parallel genetic designs with a minimal number of reagents and handling steps. SEGA bricks, typically synthetic DNA or PCR fragments, are integrated on the genome simply by combining the two reagents (i.e. competent cells and DNA), followed by incubation steps, and successful recombinants are identified by visual inspection on agar plates. The design of the SEGA standard was heavily influenced by the Standard European Vector Architecture (SEVA). SEGA landing pads typically hosts two major genetic “control elements” that influence gene expression on the transcriptional (C1), and translational (C2) level. Furthermore, landing pads contain gadgets such as selection and counterselection markers.