Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1175200
BBa_K1175200 Version 1 (Component)
the whole magilua

BBa_K1175300
BBa_K1175300 Version 1 (Component)
the whole magilua

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

ThiE
BBa_K558009 Version 1 (Component)
Thiamin monophosphate pyrophosphorylase

BBa_K2188003
BBa_K2188003 Version 1 (Component)
Whole circuit

CHE
BBa_K256023 Version 1 (Component)
Cholesteryl Esterase (CHE)

RBS-GFP-Te
BBa_I763020 Version 1 (Component)
RBS-GFP (+LVA Tag)-Terminators

"The Big P
BBa_K1080008 Version 1 (Component)
ChlP

BBa_K1260005
BBa_K1260005 Version 1 (Component)
pbad-ScFv (whole device)

"The Gun"
BBa_K1080003 Version 1 (Component)
GUN4

BBa_K612002
BBa_K612002 Version 1 (Component)
TesA' Whole Gene

BBa_P111101
BBa_P111101 Version 1 (Component)
SAMT Whole construct

Fok_a
BBa_K243000 Version 1 (Component)
Protein domain (active) of the restriction endonuclease FokI

BBa_P121101
BBa_P121101 Version 1 (Component)
SAMT whole construct (F2620)

amyE 5 IS
BBa_K143001 Version 1 (Component)
5??? Integration Sequence for the amyE locus of B. subtilis

BBa_K737058
BBa_K737058 Version 1 (Component)
Spot42 is a multitarget small RNA that mediates the discoordinate expression of the E.coli galactose

BBa_K1824890
BBa_K1824890 Version 1 (Component)
The Sequence of the SpeI/XbaI scar in BioBricks standard assembly.

BBa_K1260008
BBa_K1260008 Version 1 (Component)
pbad- ScFv(nonsp) (whole device)

BBa_K737033
BBa_K737033 Version 1 (Component)
galK is the leader sequence of galactokinase (GalK)

pCaiF
BBa_K398326 Version 1 (Component)
Promoter of the CaiF protein

BBa_K1260011
BBa_K1260011 Version 1 (Component)
pbad promoter and membrane protein LGT (whole device)

BBa_K1114300
BBa_K1114300 Version 1 (Component)
This is the MoClo formatted part of BBa_B0015.

Fok_i
BBa_K243001 Version 1 (Component)
Protein domain (inactive) of the restriction endonuclease FokI

BBa_T1002
BBa_T1002 Version 1 (Component)
Testing the categories

BBa_K1114005
BBa_K1114005 Version 1 (Component)
The MoClo format of BBa_J23104 with AB fusion sites.

"The Blue
BBa_K498000 Version 1 (Component)
T9002 - LacZ

BBa_K1260012
BBa_K1260012 Version 1 (Component)
AFB1-ScFv and membrane protein LGT whole device

AA
BBa_K1362465 Version 1 (Component)
Double A (2x the nucleotide Adenine)

BBa_K431004
BBa_K431004 Version 1 (Component)
Aspergillus fumigatus Af293 chromosome 6, whole genome shotgun sequence

BBa_K648028
BBa_K648028 Version 1 (Component)
Cro, Lamda Repressor which activates the lytic cycle

BBa_K1113701
BBa_K1113701 Version 1 (Component)
Targeting sequence for the delivery to the Carboxysome