SynBioHub

Public

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

GFP report
BBa_E0240 Version 1 (Component)
GFP generator

Public

GFP genera
BBa_E0840 Version 1 (Component)
GFP generator

Public

LuxR
BBa_I0462 Version 1 (Component)
luxR Protein Generator

Public

BBa_K727272
BBa_K727272 Version 1 (Component)
Fish Odor Generator-Complete System

Public

BBa_J13002
BBa_J13002 Version 1 (Component)
TetR repressed POPS/RIPS generator

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ATF1 gener
BBa_J45199 Version 1 (Component)
Banana odor enzyme (ATF1) generator

Public

BBa_K081014
BBa_K081014 Version 1 (Component)
RFP protein generator - PoPS->RFP

Public

BSMT1
BBa_J45119 Version 1 (Component)
Wintergreen odor enzyme (BMST1) generator

Public

BBa_K727008
BBa_K727008 Version 1 (Component)
Fish Odor Generator-Component One

Public

BBa_K727009
BBa_K727009 Version 1 (Component)
Fish Odor Generator-Component Two

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BBa_K727011
BBa_K727011 Version 1 (Component)
Fish Odor Generator-Component Three

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BBa_K1423006
BBa_K1423006 Version 1 (Component)
Arsenic Inducible Banana Odor Generator

Public

BBa_K727622
BBa_K727622 Version 1 (Component)
Rose Odor Generator Device (Geraniol)-Complete System

Public

BBa_J45219
BBa_J45219 Version 1 (Component)
Banana odor enzyme (ATF1) generator

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ATF1
BBa_J45014 Version 1 (Component)
alcohol acetyltransferase I; converts isoamyl alcohol to isoamyl acetate (banana odor)

Public

BBa_I0466
BBa_I0466 Version 1 (Component)
RhlR Protein Generator

Public

BBa_K727777
BBa_K727777 Version 1 (Component)
FMO3 Generator-Complete system

Public

WOBS
BBa_J45700 Version 1 (Component)
Wintergreen odor biosynthetic system

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//function/odor
function_odor Version 1 (Collection)

Public

BBa_K727007
BBa_K727007 Version 1 (Component)
Rose Odor Generator Device (Geraniol)

Public

WOG
BBa_J45120 Version 1 (Component)
Wintergreen odor generator

Public

Banana
BBa_J45200 Version 1 (Component)
Banana odor generator

Public

BBa_J45220
BBa_J45220 Version 1 (Component)
Banana odor generator

Public

BBa_K559010
BBa_K559010 Version 1 (Component)
Halorhodopsin complete system

Public

Wintergree
BBa_J45181 Version 1 (Component)
Exponential phase dependent wintergreen odor generator

Public

BBa_K1423007
BBa_K1423007 Version 1 (Component)
Constitutive Banana Odor Generator

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BBa_K516022
BBa_K516022 Version 1 (Component)
AiiA protein generator TERM+ RBS+(B0032)

Public

BOBS
BBa_J45900 Version 1 (Component)
Banana odor biosynthetic system

Public

BBa_K727610
BBa_K727610 Version 1 (Component)
Rose Odor Generator (Geraniol)

Public

BBa_J45180
BBa_J45180 Version 1 (Component)
Exponential phase dependent wintergreen odor generator

Public

BBa_I1466
BBa_I1466 Version 1 (Component)
RhlR protein generator (LVA-)

Public

BBa_K081012
BBa_K081012 Version 1 (Component)
GFP protein generator - PoPS->GFP

Public

BBa_J45099
BBa_J45099 Version 1 (Component)
Wintergreen odor enzyme (BSMT1) generator

Public

WOG
BBa_J45100 Version 1 (Component)
Wintergreen odor enzyme (BSMT1) generator

Public

BBa_K727010
BBa_K727010 Version 1 (Component)
Rose Odor Generator - Component One

Public

BBa_K776025
BBa_K776025 Version 1 (Component)
Complete system (Promoter PpSR)

Public

BBa_K145201
BBa_K145201 Version 1 (Component)
INPUT TetR generator

Public

BBa_K727571
BBa_K727571 Version 1 (Component)
Rose Odor Generator Device (Geraniol)

Public

EWOBS
BBa_J45500 Version 1 (Component)
Exponential phase wintergreen odor biosynthetic system

Public

BBa_M36709
BBa_M36709 Version 1 (Component)
Gemini Protein Generator

Public

BBa_J37019
BBa_J37019 Version 1 (Component)
AHL induced LuxR generator

Public

EWOBS
BBa_J45800 Version 1 (Component)
Exponential phase wintergreen odor biosynthetic system

Public

ATF1
BBa_K1379008 Version 1 (Component)
Constitutive banana odor enzyme (ATF1) generator

Public

BOG
BBa_J45250 Version 1 (Component)
Stationary-phase-dependent banana odor generator

Public

SWOG
BBa_J45170 Version 1 (Component)
Stationary-phase-dependent wintergreen odor generator

Public

BBa_J45270
BBa_J45270 Version 1 (Component)
Stationary-phase-dependent banana odor generator

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