SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

eyfp
BBa_E0030 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

ecfp
BBa_E0020 Version 1 (Component)
engineered cyan fluorescent protein derived from A. victoria GFP

BBa_B0010
BBa_B0010 Version 1 (Component)
T1 from E. coli rrnB

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

rhIR
BBa_C0171 Version 1 (Component)
rhlR repressor/activator from P. aeruginosa PA3477 (no LVA)

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss

GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212

BBa_I746000
BBa_I746000 Version 1 (Component)
AIP generator (agrB + agrD with RBSes)

BBa_I722005
BBa_I722005 Version 1 (Component)
Inducible AHL and CI generator(with CI promoter)

BBa_I722006
BBa_I722006 Version 1 (Component)
GFP Producer Controlled by 3OC6HSL (without Promoter)

lacI
BBa_C0012 Version 1 (Component)
lacI repressor from E. coli (+LVA)

aiiA
BBa_C0060 Version 1 (Component)
autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone

BBa_I712019
BBa_I712019 Version 1 (Component)
Firefly luciferase - luciferase from Photinus pyralis

BBa_J09855
BBa_J09855 Version 1 (Component)
Constitutive luxR device with pLuxR

BBa_I746100
BBa_I746100 Version 1 (Component)
AIP sensor infrastructure (agrC + agrA from S. aureus with RBSes)

CPX
BBa_I728500 Version 1 (Component)
CPX Terminal Surface Display Protein with Polystyrene-Binding Peptide

BBa_I712028
BBa_I712028 Version 1 (Component)
CherryNLS - synthetic construct monomeric red fluorescent protein with nuclear localization sequence

tetR
BBa_C0040 Version 1 (Component)
tetracycline repressor from transposon Tn10 (+LVA)

BBa_I712074
BBa_I712074 Version 1 (Component)
T7 promoter (strong promoter from T7 bacteriophage)

difR
BBa_I742102 Version 1 (Component)
dif site with reverse orientation

BBa_I712022
BBa_I712022 Version 1 (Component)
T7 RNA polymerase with NLS

BBa_I712069
BBa_I712069 Version 1 (Component)
RBS-T7 RNA polymerase with NLS

difF
BBa_I742101 Version 1 (Component)
dif site with forward orientation

pLambda+RF
BBa_I763007 Version 1 (Component)
promoter lambda (cI regulated) with RFP reporter

BBa_I712075
BBa_I712075 Version 1 (Component)
CCR5 transmembrane receptor with Myc tag and without cytosolic domain

BBa_I742133
BBa_I742133 Version 1 (Component)
CrtIB genes with PstI site mutated out

BBa_I742116
BBa_I742116 Version 1 (Component)
crtE with native ribosome binding site

BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

BBa_I716182
BBa_I716182 Version 1 (Component)
[T7][rbs][hemA from Rcap][rbs][hemB][rbs][hemC]

BBa_I716183
BBa_I716183 Version 1 (Component)
[T7][rbs][hemA from Rcap][rbs][hemB][rbs][hemC][rbs][hemD]

BBa_I746104
BBa_I746104 Version 1 (Component)
P2 promoter in agr operon from S. aureus

BBa_I742136
BBa_I742136 Version 1 (Component)
Lycopene (red pigment) producing operon without PstI sites

BBa_I742117
BBa_I742117 Version 1 (Component)
CrtY with native ribosome binding site

BBa_I742138
BBa_I742138 Version 1 (Component)
B-carotene (organge pigment) producing operon without PstI sites

BBa_I742118
BBa_I742118 Version 1 (Component)
CrtZ with native ribosome binding site

BBa_I742139
BBa_I742139 Version 1 (Component)
Zeaxanthin (yellow pigment) synthesis operon without PstI sites

BBa_I742105
BBa_I742105 Version 1 (Component)
Sam5 gene with ribosome binding site

BBa_I742106
BBa_I742106 Version 1 (Component)
Sam8 gene with ribosome binding site

BBa_J15001
BBa_J15001 Version 1 (Component)
strong synthetic E. coli ribosome binding site with SacI site.

BBa_I746001
BBa_I746001 Version 1 (Component)
I746000 (AIP generator - agrB + agrD with RBSes) + B0015 (Terminator)

BBa_I746008
BBa_I746008 Version 1 (Component)
I0500 (Inducible pBad/araC) + I746001 (AIP generator - agrB + agrD with RBSes + Terminator)

BBa_I746101
BBa_I746101 Version 1 (Component)
I746100 (AIP sensor infrastructure - agrC + agrA with RBSes) + B0015 (Terminator)

BBa_I746103
BBa_I746103 Version 1 (Component)
I746101 (AIP sensor infrastructure - agrC + agrA with RBSes + Terminator) + I746104 (Inducible P2)

BBa_I712010
BBa_I712010 Version 1 (Component)
CD4 sequence without signal peptide

BBa_I712070
BBa_I712070 Version 1 (Component)
T7 promoter - RBS -T7 RNA polymerase with NLS

rbs+sam5
BBa_I742147 Version 1 (Component)
sam5 (coumarate hydroxylase) with native rbs.

rbs+sam8
BBa_I742148 Version 1 (Component)
sam8 (tyrosine ammonia lyase) with native rbs