SynBioHub

Public

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

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BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss

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BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency

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//regulation/positive
regulation_positive Version 1 (Collection)

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BBa_B0010
BBa_B0010 Version 1 (Component)
T1 from E. coli rrnB

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BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

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//collections
collections Version 1 (Collection)

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BBa_K1051006
BBa_K1051006 Version 1 (Component)
Saccharomycescerevisiae TBY-1 terminator with stopcodon

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spacer
BBa_B0040 Version 1 (Component)
Spacer.1 (generic)

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BBa_K1351028
BBa_K1351028 Version 1 (Component)
LMU Bacillus RBS collection 1

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Lock 1
BBa_J01010 Version 1 (Component)
Riboregulator Lock 1

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BBa_B0015
BBa_B0015 Version 1 (Component)
double terminator (B0010-B0012)

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BBa_K1351030
BBa_K1351030 Version 1 (Component)
LMU Bacillus RBS collection 3

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Key 1
BBa_J01008 Version 1 (Component)
Riboregulator key 1

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BBa_I712015
BBa_I712015 Version 1 (Component)
HIV-1 protease cleavage site

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BBa_K1351032
BBa_K1351032 Version 1 (Component)
LMU Bacillus RBS collection 5

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BBa_K1351034
BBa_K1351034 Version 1 (Component)
LMU Bacillus RBS collection 7

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BBa_K1351031
BBa_K1351031 Version 1 (Component)
LMU Bacillus RBS collection 4

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BBa_K1351033
BBa_K1351033 Version 1 (Component)
LMU Bacillus RBS collection 6

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BBa_K1351029
BBa_K1351029 Version 1 (Component)
LMU Bacillus RBS collection 2

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iGEM Parts Registry
igem_collection Version 1 (Collection)
The iGEM Registry is a growing collection of genetic parts that can be mixed and matched to build synthetic biology devices and systems. As part of the synthetic biology community's efforts to make biology easier to engineer, it provides a source of genetic parts to iGEM teams and academic labs.

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BBa_J37013
BBa_J37013 Version 1 (Component)
iGEM

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BBa_B0029
BBa_B0029 Version 1 (Component)
1 bp deletion from B0031

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p(tetR)
BBa_R0040 Version 1 (Component)
TetR repressible promoter

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GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212

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RFC105 Z
BBa_K1362421 Version 1 (Component)
C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z

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BBa_K415156
BBa_K415156 Version 1 (Component)
MIT iGEM 2010 Phage

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BBa_K165007
BBa_K165007 Version 1 (Component)
Gli-1 DNA-binding domain

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BBa_K1321306
BBa_K1321306 Version 1 (Component)
Komagataeibacter rhaeticus iGEM

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BBa_K1025002
BBa_K1025002 Version 1 (Component)
iGEM-mut part

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BBa_K175046
BBa_K175046 Version 1 (Component)
Plasmid 1 for Transcriptional Cascade subproject TU Delft iGEM 09

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Devices from the iGEM 2016 interlab
iGEM_2016_interlab_collection Version 1 (Collection)
This is a collection of devices that were used in the 2016 iGEM interlab study

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cI TP901
BBa_C0075 Version 1 (Component)
TP901 cI repressor from phage TP901-1 (+LVA)

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BBa_K1763440
BBa_K1763440 Version 1 (Component)
MaSp1/2[1:1]-12(1C3)

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BBa_K094120
BBa_K094120 Version 1 (Component)
pLacI/ara-1

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BBa_K315014
BBa_K315014 Version 1 (Component)
TetA (Optimized from bp 1 to 141)

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BBa_J16000
BBa_J16000 Version 1 (Component)
iGEM tutorial part

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BBa_K879091
BBa_K879091 Version 1 (Component)
Upstream region 1

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BBa_K315015
BBa_K315015 Version 1 (Component)
TetA gene (DeOptimized from bp 1 to 141)

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BBa_K879092
BBa_K879092 Version 1 (Component)
Downstream region 1

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BBa_J202000
BBa_J202000 Version 1 (Component)
PBAD mutant#1

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BBa_K1713000
BBa_K1713000 Version 1 (Component)
Plac/ara-1, a hybrid promoter

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pSB1AT3-1
pSB1AT3_1 Version 1 (Component)
pSB1AT3 with ccdB insert

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BBa_K1486019
BBa_K1486019 Version 1 (Component)
rLuc[1]

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dxs
BBa_K118000 Version 1 (Component)
dxs coding sequence encoding 1-deoxyxylulose-5-phosphate synthase

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BBa_J16002
BBa_J16002 Version 1 (Component)
iGEM tutorial part (2)

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pSB1AC3-1
pSB1AC3_1 Version 1 (Component)
pSB1AC3 with ccdB insert

Public

pSB1AK3-1
pSB1AK3_1 Version 1 (Component)
PSB1AK3 with ccdB insert

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