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Public
iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1
Public
SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Public
BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7
Public
BBa_B0010
BBa_B0010 Version 1 (Component)
T1 from E. coli rrnB
Public
BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency
Public
BBa_B0015
BBa_B0015 Version 1 (Component)
double terminator (B0010-B0012)
Public
p(tetR)
BBa_R0040 Version 1 (Component)
TetR repressible promoter
Public
GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Public
BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss
Public
LacI
BBa_R0010 Version 1 (Component)
promoter (lacI regulated)
Public
BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030
Public
BBa_J23100
BBa_J23100 Version 1 (Component)
constitutive promoter family member
Public
mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
Public
lacI+pL
BBa_R0011 Version 1 (Component)
Promoter (lacI regulated, lambda pL hybrid)
Public
scar
BBa_J176041 Version 1 (Component)
Silver scar
Public
tetR
BBa_C0040 Version 1 (Component)
tetracycline repressor from transposon Tn10 (+LVA)
Public
lux pR
BBa_R0062 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pR)
Public
pBad/araC
BBa_I0500 Version 1 (Component)
Inducible pBad/araC promoter
Public
BBa_J23119
BBa_J23119 Version 1 (Component)
constitutive promoter family member
Public
lacI
BBa_C0012 Version 1 (Component)
lacI repressor from E. coli (+LVA)
Public
luxr
BBa_C0062 Version 1 (Component)
luxR repressor/activator, (no LVA?)
Public
cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)
Public
eyfp
BBa_E0030 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP
Public
BBa_J23101
BBa_J23101 Version 1 (Component)
constitutive promoter family member
Public
BBa_J23106
BBa_J23106 Version 1 (Component)
constitutive promoter family member
Public
cI lam
BBa_R0051 Version 1 (Component)
promoter (lambda cI regulated)
Public
BBa_B0011
BBa_B0011 Version 1 (Component)
LuxICDABEG (+/-)
Public
mCh
BBa_J176005 Version 1 (Component)
mCh
Public
BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030
Public
BBa_B0014
BBa_B0014 Version 1 (Component)
double terminator (B0012-B0011)
Public
luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL
Public
pT7
BBa_I719005 Version 1 (Component)
T7 Promoter
Public
BBa_I13453
BBa_I13453 Version 1 (Component)
Pbad promoter
Public
Amp Cas
BBa_I13800 Version 1 (Component)
Ampicillin Resistance Cassette
Public
GFP report
BBa_E0240 Version 1 (Component)
GFP generator
Public
BBa_B0012_sequence
BBa_B0012_sequence Version 1 (Sequence)

Public
BBa_B0010_sequence
BBa_B0010_sequence Version 1 (Sequence)

Public
BBa_B0034_sequence
BBa_B0034_sequence Version 1 (Sequence)

Public
BBa_B0015_sequence
BBa_B0015_sequence Version 1 (Sequence)

Public
PspaS_core_seq
PspaS_core_seq Version 1 (Sequence)

Public
rrnO_ter_seq
rrnO_ter_seq Version 1 (Sequence)

Public
PspaRK_seq
PspaRK_seq Version 1 (Sequence)

Public
SpaR_seq
SpaR_seq Version 1 (Sequence)

Public
SpaK_seq
SpaK_seq Version 1 (Sequence)

Public
BBa_E0040_sequence
BBa_E0040_sequence Version 1 (Sequence)

Public
RBS_SpaR_seq
RBS_SpaR_seq Version 1 (Sequence)

Public
RBS_SpaK_seq
RBS_SpaK_seq Version 1 (Sequence)

Public
BBa_R0040_sequence
BBa_R0040_sequence Version 1 (Sequence)

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