SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
BBa_B0012BBa_B0012 Version 1 (Component)TE from coliphageT7
BBa_B0010BBa_B0010 Version 1 (Component)T1 from E. coli rrnB
BBa_B0015BBa_B0015 Version 1 (Component)double terminator (B0010-B0012)
BBa_K249001BBa_K249001 Version 1 (Component)Arabinose Induced Inverter
flhDCBBa_K554001 Version 1 (Component)flhDC promoter
p(tetR)BBa_R0040 Version 1 (Component)TetR repressible promoter
Fok_iBBa_K243001 Version 1 (Component)Protein domain (inactive) of the restriction endonuclease FokI
GFPBBa_E0040 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
BBa_K223001BBa_K223001 Version 1 (Component)SoxS promoter
BBa_K352001BBa_K352001 Version 1 (Component)CooA from Rhodospirillum rubrum
BBa_K524001BBa_K524001 Version 1 (Component)pLac + RBS + split sfGFP 1-10
LysABBa_K284001 Version 1 (Component)Lysozyme from Gallus gallus
BBa_K523001BBa_K523001 Version 1 (Component)RBS + malS (E. coli periplasmic α-amylase)
BBa_K258001BBa_K258001 Version 1 (Component)Lipase ABC transporter recognition domain (LARD 1)
sinIBBa_K594001 Version 1 (Component)a luxI homologous AHL synthetase from Sinorhizobium meliloti 1021
BBa_K624001BBa_K624001 Version 1 (Component)tetR+RBS+GFP+ter
Subtilin PBBa_K104001 Version 1 (Component)Sensor for small peptide Subtilin
BBa_K523002BBa_K523002 Version 1 (Component)RBS + bglX (E. coli perisplasmic β-glucosidase)
BBa_K523003BBa_K523003 Version 1 (Component)malS for BioSandwich
BBa_K584001BBa_K584001 Version 1 (Component)Constitutive promoter + GFP generator
LacIBBa_R0010 Version 1 (Component)promoter (lacI regulated)
BBa_K500001BBa_K500001 Version 1 (Component)lignin degradation 2
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
BBa_K517001BBa_K517001 Version 1 (Component)GPD constitutive yeast promoter
BBa_K523004BBa_K523004 Version 1 (Component)bglX for BioSandwich
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
BBa_K524003BBa_K524003 Version 1 (Component)<i>nadE</i> gene
BisdBBBa_K123001 Version 1 (Component)BisdB
BBa_K194001BBa_K194001 Version 1 (Component)GFP (a yeast- and FACS-optimized GFP variant),
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K264001BBa_K264001 Version 1 (Component)Modular UP-element Design 2
BBa_K342001BBa_K342001 Version 1 (Component)Pha C (poly-β-hydroxybutyrate polymerase)
BBa_K1520001BBa_K1520001 Version 1 (Component)Riboswitch MC7
BBa_K524000BBa_K524000 Version 1 (Component)Heat sensitive origin of replication (oriR101 & repA101-ts)
BBa_K427001BBa_K427001 Version 1 (Component)C protein of the Mu bacteriophage
BBa_K542001BBa_K542001 Version 1 (Component)pLacI Regulated Lumazine Synthase
BBa_K574001BBa_K574001 Version 1 (Component)TetR regulated by 3OC6HSL
BBa_K124003BBa_K124003 Version 1 (Component)Bacteriophage 21 Lysis Cassette S, R, and Rz (PVJ4)
BBa_K328001BBa_K328001 Version 1 (Component)cspA Promoter + Cold Box + UTR + SD + DB
BBa_K174001BBa_K174001 Version 1 (Component)Arabinose inducible system