SynBioHub

Public

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

vioA
vioA Version (Component)

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vioA-AB
BBa_K349109 Version 1 (Component)
vioA-AB (BioBytes 2.0)

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vioD
vioD Version (Component)

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vioC
vioC Version (Component)

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vioB
vioB Version (Component)

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vioE
vioE Version (Component)

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vioD-AB
BBa_K349111 Version 1 (Component)
vioD-AB (BioBytes 2.0)

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vioB-AB
BBa_K349110 Version 1 (Component)
vioB-AB (BioBytes 2.0)

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vioE-AB
BBa_K349112 Version 1 (Component)
vioE-AB (BioBytes 2.0)

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kanA
BBa_K349115 Version 1 (Component)
kanR-AB (BioBytes 2.0)

Public

crtI-AB
BBa_K349104 Version 1 (Component)
crtI-AB (BioBytes 2.0)

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crtY-AB
BBa_K349103 Version 1 (Component)
crtY-AB (BioBytes 2.0)

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lacI-AB
BBa_K349107 Version 1 (Component)
lacI-AB (BioBytes 2.0)

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lambdaCI-A
BBa_K349108 Version 1 (Component)
lambdaCI-AB (BioBytes 2.0)

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chlorR-AB
BBa_K349118 Version 1 (Component)
chlorR-AB (BioBytes 2.0)

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CFP-AB
BBa_K349113 Version 1 (Component)
CFP-AB (BioBytes 2.0)

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BBa_K349119
BBa_K349119 Version 1 (Component)
mWasabi-AB (BioBytes 2.0)

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ampR-AB
BBa_K349116 Version 1 (Component)
ampR-AB (BioBytes 2.0)

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nRFP-AB
BBa_K349114 Version 1 (Component)
nRFP-AB (BioBytes 2.0)

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tetA
BBa_K349117 Version 1 (Component)
tetR-AB (BioBytes 2.0)

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crtE-AB
BBa_K349101 Version 1 (Component)
crtE-AB (BioBytes 2.0)

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tetrep-AB
BBa_K349106 Version 1 (Component)
tet_rep-AB (BioBytes 2.0)

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crtB-AB
BBa_K349102 Version 1 (Component)
crtB-AB (BioBytes 2.0)

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araC-AB
BBa_K349105 Version 1 (Component)
araC-AB (BioBytes 2.0)

Public

RFP-AB-Bfu
BBa_K349005 Version 1 (Component)
RFP-AB-BfuAI (for construction of AB BioBytes 2.0)

Public

KanR-AB-Bf
BBa_K349011 Version 1 (Component)
KanR-AB-BfuAI (for construction of AB BioBytes 2.0)

Public

RFP-AB-Bsa
BBa_K349001 Version 1 (Component)
RFP-AB-BsaI (for construction of AB BioBytes 2.0)

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KanR-AB-Bb
BBa_K349009 Version 1 (Component)
KanR-AB-BbsI (for construction of AB BioBytes 2.0)

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RFP-BA-Bbs
BBa_K349003 Version 1 (Component)
RFP-BA-BbsI (for construction of BA BioBytes 2.0)

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BBa_K598020
BBa_K598020 Version 1 (Component)
B0015+pBAD+vioAB+B0015+pBAD+TPP Up-regulated Hammerhead Ribozyme 1.20+vioD+B0015+pBAD+vioE

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kanB
BBa_K349301 Version 1 (Component)
kanR-BA (BioBytes 2.0)

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ampR-BA
BBa_K349302 Version 1 (Component)
ampR-BA (BioBytes 2.0)

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tetR-BA
BBa_K349303 Version 1 (Component)
tetR-BA (BioBytes 2.0)

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BBa_J70638
BBa_J70638 Version 1 (Component)
rbs VioA rbs VioB

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BBa_K1114005
BBa_K1114005 Version 1 (Component)
The MoClo format of BBa_J23104 with AB fusion sites.

Public

BBa_J70637
BBa_J70637 Version 1 (Component)
rbs VioA rbs VioB

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BBa_K1321005
BBa_K1321005 Version 1 (Component)
Synthetic Phytochelatin EC(20) RFC[25]

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virA
BBa_K389010 Version 1 (Component)
VirA receptor (expressed)

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Kan-BA-Bbs
BBa_K349010 Version 1 (Component)
KanR-BA-BbsI (for construction of BA BioBytes 2.0)

Public

RFP-BA-Bfu
BBa_K349006 Version 1 (Component)
RFP-BA-BfuAI (for construction of BA BioBytes 2.0)

Public

RFP-BA-Bsa
BBa_K349002 Version 1 (Component)
RFP-BA-BsaI (for construction of BA BioBytes 2.0)

Public

BBa_J70641
BBa_J70641 Version 1 (Component)
rbs vioC rbs vioE

Public

BBa_J70639
BBa_J70639 Version 1 (Component)
rbs vioC rbs VioD

Public

pBAD-CDE-D
BBa_K323132 Version 1 (Component)
VioC, VioD and VioE enzymes fused with zinc fingers under pBAD promoter

Public

BBa_K598019
BBa_K598019 Version 1 (Component)
B0015+pBAD+vioABD+B0015+pBAD+TPP Down-regulated Hammerhead Ribozyme 2.5+vioE

Public

BBa_K106002
BBa_K106002 Version 1 (Component)
Sir2, Aar1 AB part

Public

KanR-AB-Bs
BBa_K349007 Version 1 (Component)
KanR-AB-BsaI (for construction of AB BioBytes 2.0)

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