BBa_K1218017

BBa_K1218017 Version 1

Component

Source:
http://parts.igem.org/Part:BBa_K1218017
Generated By: https://synbiohub.org/public/igem/igem2sbol/1
Created by: Gordon Wade
Date created: 2013-08-28 11:00:00
Date modified: 2015-05-08 01:09:42

Ancestral CysE



Types
DnaRegion

Roles
Coding

CDS

Description

This is an ancestrally predicted version of the CysE gene, which is involved in amino acid synthesis. CysE is responsible for synthesizing cysteine. This ancestral version was predicted using the representative data from Pfam (PF06426) and PAML with the Lazarus suite. This Pfam data included only the N-terminal of the gene. The part here includes the predicted ancestral N-terminal fused with the remainder of the CysE gene from E coli (K12).

Notes

Design considerations included figuring out how to combine a partial prediction of this gene (the N-terminal) with the remaining region of the gene from E coli (K12).

Source

This version of CysE is a predicted ancestral sequence. It comes from a prediction made using Pfam seed data (PF06426) as an input for PAML with Lazarus, which is used to predict sequences of a common ancestor. This process makes up the N-terminal. The rest of the gene is the wild type found in E coli (K12).

igem#experience
None
 
igem#sampleStatus
No part sequence
igem#status
Deleted
 
synbiohub#ownedBy
user/james
 
synbiohub#ownedBy
user/myers
 
synbiohub#topLevel
BBa_K1218017/1