VR7 bindin

BBa_K176041 Version 1

Component

Source:
http://parts.igem.org/Part:BBa_K176041
Generated By: https://synbiohub.org/public/igem/igem2sbol/1
Created by: Jiayi Dou, Hao Jiang
Date created: 2009-08-12 11:00:00
Date modified: 2015-05-08 01:11:02

Reverse primer VR7 (K176051) binding site



Types
DnaRegion

Roles
DNA

sequence_feature

Sequences BBa_K176041_sequence (Version 1)

Description

This part can be ligated into composite parts as a primer binding site for PCR identification of the part or sequencing of the part. It will be very useful when many composite parts have similar lengths, then PCR using VF2 and VR cannot be used to identify the parts.

Reverse primers VR3~VR12 are designed with our software tool, which is modified from primer3 to pick primers from random sequences for synthetic biological primer design. These primers are designed to be perfectly paired with VF2 and without cross-reactivities to each other.

Notes

Designed with our software tool, which is modified from primer3 to pick primers from random sequences for synthetic biological primer design.

Main parameters for picking VR3~VR12:

Size: 20 bp (N19 + G or C)

Tm: VF2 Tm ??1℃

GC%: 50%

Max Self Complementarity: 3 bp

Max 3' Self Complementarity: 2 bp

Max Pair Complementarity: 3 bp

Max 3' Pair Complementarity: 2 bp

Max 3' Stability: 3.36 kcal/mol

Max Template(pSB1A3) Mispriming: 6 bp

Max Mispriming With Other VR3~VR12 Sites: 4 bp

Source

Reverse complement of VR7 (K176051). Picked from random sequences.

Sequence Annotation Location Component / Role(s)
VR7
1,20
feature/primer_binding primer_binding_site
igem#experience
Works
 
igem#sampleStatus
It's complicated
igem#status
Planning
 
synbiohub#ownedBy
user/james
 
synbiohub#ownedBy
user/myers
 
synbiohub#topLevel
BBa_K176041/1