BBa_K1978000

BBa_K1978000 Version 1

Component

Source:
http://parts.igem.org/Part:BBa_K1978000
Generated By: https://synbiohub.org/public/igem/igem2sbol/1
Created by: Larissa Kr??ger
Date created: 2016-10-12 11:00:00
Date modified: 2016-10-17 02:45:40

TorA-BtuF



Types
DnaRegion

Roles
engineered_region

Composite

Sequences BBa_K1978000_sequence (Version 1)

Description

The TorA-BtuF Biobrick consists of a TorA signal linked to BtuF, which is a vitamin B12 binding protein. The TorA signal sequence allows export of fully-folded proteins through the inner membrane via the TAT(Twin-Arginin)export system. This enables export of vitamin B12 out of the cell.
The TorA sequence codes for a peptide that harbours a twin-arginine motif. This is vital for the recognition by the Tat system. Moreover, an AxA motif is present, which leads to cleavage by the leader peptidase I (Palmer & Berks 2012).

MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATA

BtuF is the periplasmic binding protein relevant for uptake of vitamin B12 through the outer membrane that is associated with the ABC transporter BtuCD (Kandt et al., 2006). BtuF is the periplasmic binding protein. It has a size of 30.19 kDa and is composed of two globular domains, between which vitamin B12 is bound, linked by a rigid interdomain α-helix (Karpowich et al., 2003).

The TorA signal sequence and the sequence for BtuF are connected by a long linker.

Notes

The sequences were designed by codon optimization and exclusion of restriction sites present in iGEM prefix and suffix. The linker needed to be constructed in a way that is similar to the BtuF amino acid sequence.

Source

All DNA sequences were synthesized by IDT on the basis of the amino acid sequence of TorA in E.coli and BtuF from E. coli (K12).

Sequence Annotation Location Component / Role(s)
TorA Signal Peptide
Linker
BtuF
1,117
118,132
133,927
feature/protein CDS
feature/dna sequence_feature
feature/protein CDS
igem#experience
None
 
igem#status
Planning
 
synbiohub#ownedBy
user/james
 
synbiohub#ownedBy
user/myers
 
synbiohub#topLevel
BBa_K1978000/1