BBa_K1978001

BBa_K1978001 Version 1

Component

Source:
http://parts.igem.org/Part:BBa_K1978001
Generated By: https://synbiohub.org/public/igem/igem2sbol/1
Created by: Larissa Kr??ger
Date created: 2016-10-12 11:00:00
Date modified: 2016-10-13 04:56:34

TorA-GlmS



Types
DnaRegion

Roles
engineered_region

Composite

Sequences BBa_K1978001_sequence (Version 1)

Description

The TorA-GlmS Biobrick consists of a TorA signal linked to GlmS, which is a vitamin B12 binding protein. The TorA signal sequence allows export of fully-folded proteins through the inner membrane via the TAT(Twin-Arginin)export system. This enables export of vitamin B12 out of the cell.
The TorA sequence codes for a peptide that harbours a twin-arginine motif. This is vital for the recognition by the Tat system. Moreover, an AxA motif is present, which leads to cleavage by the leader peptidase I (Palmer & Berks 2012).

MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATA

GlmS is the B12-binding subunit of glutamate mutase (Glm) from Clostridium cochlearium. The mechanism by which the enzyme uses adenosylcobalamin is highly similar to methylmalonyl coenzyme A mutase. Glm catalyzes the reversible rearrangement of (2S)-glutamate to (2S,3S)-3-methylaspartate (Leutbecher et al., 1992). The assembly of the active enzyme, an α2β2 tetramer, is mediated by coenzyme B12. While GlmS as the smaller subunit (14.8 kDa) binds B12, the larger subunit GlmE harbors the substrate binding site (Zelder et al., 1994).

Notes

The sequences were designed by codon optimization and exclusion of restriction sites present in iGEM prefix and suffix. The linker needed to be constructed in a way that is similar to the GlmS amino acid sequence.

Source

All DNA sequences were synthesized by IDT on the basis of the amino acid sequence of TorA in E.coli and GlmS from Clostridium cochlearium.

Sequence Annotation Location Component / Role(s)
TorA Signal Peptide
Linker
GlmS
1,117
118,132
133,540
CDS feature/protein
sequence_feature feature/dna
feature/protein CDS
igem#status
Planning
 
synbiohub#ownedBy
user/james
 
synbiohub#ownedBy
user/myers
 
synbiohub#topLevel
BBa_K1978001/1