BBa_K277053

BBa_K277053 Version 1

Component

Source:
http://parts.igem.org/Part:BBa_K277053
Generated By: https://synbiohub.org/public/igem/igem2sbol/1
Created by: James DiCarlo
Date created: 2009-10-20 11:00:00
Date modified: 2015-05-08 01:11:46

3L.3_23.B3.01



Types
DnaRegion

Roles
Other

sequence_feature

Sequences BBa_K277053_sequence (Version 1)

Description

3L.3_23.B3.01 is 751 bases long and is cloned into the pGem-T vector.

3L.3_23.B3.01 was designed as a piece of synthetic chromosome 3 with the goal of minimizing and stabilizing that chromosome and to that end has had any tRNAs, introns, repeat regions, and transposons that were present in the wildtype chromosome removed. In addition a very few gene sequences were slightly recoded to add or remove restriction enzyme recognition sites to facilitate assembly; most gene sequences were slightly recoded to introduce unique primers for diagnostic PCR amplification, and some gene sequences were slightly recoded to address the distribution of stop codon usage. 3L.3_23.B3.01 is a constituent of 3L.3_23.B3 (along with 3L.3_23.B3.02, 3L.3_23.B3.03, 3L.3_23.B3.04, 3L.3_23.B3.05, 3L.3_23.B3.06, 3L.3_23.B3.07, 3L.3_23.B3.08, and 3L.3_23.B3.09.)

This part contains at least part of the following features (positions offset from first base of sequence):
kind and name offset notes
gene YCL043C (231..+1799) Protein disulfide isomerase%2C multifunctional protein resident in the endoplasmic reticulum lumen%2C essential for the formation of disulfide bonds in secretory and cell-surface proteins%2C unscrambles non-native disulfide bonds
reverse_primer YCL043C_tagr1v1 (705..732)
forward_primer YCL043C_tagf1v1 (375..402)
mutation_affecting_coding_sequence YCL043C_re_remove_Bpu10I (288..296) removal of Bpu10I
mutation_affecting_coding_sequence YCL043C_re_remove_MmeI (513..524) removal of MmeI

Sequence (the first 751 bases correspond to coordinates 38762..39512 in synthetic chromosome yeast_chr3_3_23

Notes

Constructed using overlap extension PCR protocol described in RFC38

Source

Synthetic Yeast

igem#sampleStatus
It's complicated
igem#status
Planning
 
synbiohub#ownedBy
user/james
 
synbiohub#ownedBy
user/myers
 
synbiohub#topLevel
BBa_K277053/1