Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

SEGA021
SEGA021 Version 1 (Component)
natural linear DNA.

SEGA022
SEGA022 Version 1 (Component)
natural linear DNA.

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1321339
BBa_K1321339 Version 1 (Component)
CBDcenA+Linker, RFC 25 standard

CBDcipA
BBa_K1615111 Version 1 (Component)
CBDcipA with N and C-terminal linker in RFC25

linker
BBa_K133132 Version 1 (Component)
8 aa protein domain linker

OmpA
BBa_K103006 Version 1 (Component)
OmpA outer membrane protein A fused to linker; displays proteins on cell surface

BBa_K1615032
BBa_K1615032 Version 1 (Component)
Linker-CBDcipA-linker fused to MaoA in RFC25

BBa_K1615024
BBa_K1615024 Version 1 (Component)
CBDcenA+Linker fused to MaoA in RFC25

BBa_K1615025
BBa_K1615025 Version 1 (Component)
MaoA fused to CBDcenA+Linker in RFC25

BBa_K1321340
BBa_K1321340 Version 1 (Component)
Double CBD (dCBD) with N-terminal linker

BBa_K1321002
BBa_K1321002 Version 1 (Component)
Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25

BBa_K1462502
BBa_K1462502 Version 1 (Component)
PDZ domain + Linker

BBa_K1150013
BBa_K1150013 Version 1 (Component)
AGS Linker

BBa_K1321003
BBa_K1321003 Version 1 (Component)
Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25

BBa_K1462503
BBa_K1462503 Version 1 (Component)
SH3 domain + Linker

BBa_K1462501
BBa_K1462501 Version 1 (Component)
GBD domian + Linker

BBa_K1615011
BBa_K1615011 Version 1 (Component)
MorA fused to Linker-CBDcipA-linker in RFC25

BBa_K1615033
BBa_K1615033 Version 1 (Component)
MorA fused to Linker-CBDcipA-linker in RFC25

BBa_K1615100
BBa_K1615100 Version 1 (Component)
mRFP fused to Linker-CBDcipA-linker in RFC25

BBa_K1615010
BBa_K1615010 Version 1 (Component)
Linker-CBDcipA-linker fused to MorA in RFC25

BBa_K1615099
BBa_K1615099 Version 1 (Component)
Linker-CBDcipA-linker fused to mRFP in RFC25

BBa_K1615078
BBa_K1615078 Version 1 (Component)
TVEL5 fused to Linker-CBDcipA-linker in RFC25

BBa_K1615027
BBa_K1615027 Version 1 (Component)
MaoA fused to Linker+dCBD in RFC25

BBa_K1615026
BBa_K1615026 Version 1 (Component)
Linker+dCBD fused to MaoA in RFC25

BBa_K1615055
BBa_K1615055 Version 1 (Component)
Linker-CBDcipA-linker fused to Heroin Esterase in RFC25

BBa_K1615056
BBa_K1615056 Version 1 (Component)
Heroin Esterase fused to Linker-CBDcipA-linker in RFC25

BBa_K1615077
BBa_K1615077 Version 1 (Component)
Linker-CBDcipA-linker fused to TVEL5 in RFC25

BBa_K1615092
BBa_K1615092 Version 1 (Component)
mRFP fused to CBDcenA+Linker in RFC25

BBa_K1615069
BBa_K1615069 Version 1 (Component)
CBDcenA+Linker fused to TVEL5 in RFC25

BBa_K1615002
BBa_K1615002 Version 1 (Component)
CBDcenA+Linker fused to MorA in RFC25

BBa_K1615091
BBa_K1615091 Version 1 (Component)
CBDcenA+Linker fused to mRFP in RFC25

BBa_K1615003
BBa_K1615003 Version 1 (Component)
MorA fused to CBDcenA+Linker in RFC25

BBa_K1615070
BBa_K1615070 Version 1 (Component)
TVEL5 fused to CBDcenA+Linker in RFC25

BBa_K1321351
BBa_K1321351 Version 1 (Component)
CBDcenA with linker fused to NiBP in Freiburg format (RFC 25)

BBa_K323107
BBa_K323107 Version 1 (Component)
PBSII zinc finger + linker