Cryptococcus neoformans Database in Synthetic Biology Open Language

CnD_collection Version 1

Collection

Created by: Sophia Garcia de Resende
Date created: 2022-06-10 15:00:35.912
Date modified: 2022-06-22 20:46:13

This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.



Members

NameIdentifierTypeDescription

Description

This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Source

The parts were obtain through a extensive literature review and by search of plasmids in databases such as NCBI and AddGene.

References


DiCarlo, JE., Norville, JE., Mali, P., Rios, X., Aach, J., Church, GM., "Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems.", Nucleic acids research, 2013, Apr 41(7): 4336-43, PMID: 23460208., DOI: 10.1093/nar/gkt135.

So, YS., Yang, DH., Jung, KW., Huh, WK., Bahn, YS., "[object Object]", Journal of microbiology and biotechnology, 2017, Feb 28; 27(2): 357-364, PMID: 27780958., DOI: 10.4014/jmb.1609.09036.

Arras, SD., Chua, SM., Wizrah, MS., Faint, JA., Yap, AS., Fraser, JA., "Targeted Genome Editing via CRISPR in the Pathogen Cryptococcus neoformans.", PloS one, 2016, 11(10): e0164322, PMID: 27711143., DOI: 10.1371/journal.pone.0164322.

Luberto, C., Martinez-Mariño, B., Taraskiewicz, D., Bolaños, B., Chitano, P., Toffaletti, DL., Cox, GM., Perfect, JR., Hannun, YA., Balish, E., Del Poeta, M., "Identification of App1 as a regulator of phagocytosis and virulence of Cryptococcus neoformans.", The Journal of clinical investigation, 2003, Oct 112(7): 1080-94, PMID: 14523045.

Wang, Y., Wei, D., Zhu, X., Pan, J., Zhang, P., Huo, L., Zhu, X., "A 'suicide' CRISPR-Cas9 system to promote gene deletion and restoration by electroporation in Cryptococcus neoformans.", Scientific reports, 2016, Aug 09; 631145, PMID: 27503169., DOI: 10.1038/srep31145.

Ruff, JA., Lodge, JK., Baker, LG., "Three galactose inducible promoters for use in C. neoformans var. grubii.", Fungal genetics and biology : FG & B, 2009, Jan 46(1): 9-16, PMID: 18952189., DOI: 10.1016/j.fgb.2008.10.003.

Varma, A., Kwon-Chung, KJ., "Characterization of the glyceraldehyde-3-phosphate dehydrogenase gene [correction of glyceraldehyde-3-phosphate gene] and the use of its promoter for heterologous expression in Cryptococcus neoformans, a human pathogen.", Gene, 1999, May 31; 232(2): 155-63, PMID: 10352226.

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