Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1321002
BBa_K1321002 Version 1 (Component)
Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25

BBa_K1321003
BBa_K1321003 Version 1 (Component)
Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25

BBa_K1615031
BBa_K1615031 Version 1 (Component)
MaoA fused to CBDclos in RFC25

BBa_K1615030
BBa_K1615030 Version 1 (Component)
CBDclos fused to MaoA in RFC25

BBa_K1321341
BBa_K1321341 Version 1 (Component)
sfGFP fused to CBDclos in RFC 25

BBa_K1321343
BBa_K1321343 Version 1 (Component)
NiBP fused to CBDclos in RFC 25

BBa_K1321346
BBa_K1321346 Version 1 (Component)
CBDclos fused to sfGFP in RFC 25

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K1615029
BBa_K1615029 Version 1 (Component)
MaoA fused to CBDcex in RFC25

BBa_K1615028
BBa_K1615028 Version 1 (Component)
CBDcex fused to MaoA in RFC25

BBa_K1615008
BBa_K1615008 Version 1 (Component)
CBDclos fused to MorA in RFC25

BBa_K1615097
BBa_K1615097 Version 1 (Component)
CBDclos fused to mRFP in RFC25

BBa_K1615009
BBa_K1615009 Version 1 (Component)
MorA fused to CBDclos in RFC25

BBa_K1615054
BBa_K1615054 Version 1 (Component)
HerE fused to CBDclos in RFC25

BBa_K1615027
BBa_K1615027 Version 1 (Component)
MaoA fused to Linker+dCBD in RFC25

BBa_K1615024
BBa_K1615024 Version 1 (Component)
CBDcenA+Linker fused to MaoA in RFC25

BBa_K1615026
BBa_K1615026 Version 1 (Component)
Linker+dCBD fused to MaoA in RFC25

BBa_K1615025
BBa_K1615025 Version 1 (Component)
MaoA fused to CBDcenA+Linker in RFC25

BBa_K1615098
BBa_K1615098 Version 1 (Component)
mRFP fused to CBDclos in RFC25

MaoA
BBa_K1615022 Version 1 (Component)
Monoamine Oxidase A RFC25

BBa_K1615053
BBa_K1615053 Version 1 (Component)
CBDclos fused to Heroin Esterase in RFC25

HerE
BBa_K1615045 Version 1 (Component)
Heroin Esterase in RFC25

BBa_K1321151
BBa_K1321151 Version 1 (Component)
metallothionein Fmt fused to CBDclos

BBa_K1321121
BBa_K1321121 Version 1 (Component)
Smt metallothionein fused to CBDclos

BBa_K1321154
BBa_K1321154 Version 1 (Component)
CBDclos fused to metallothionein Fmt

BBa_K1615032
BBa_K1615032 Version 1 (Component)
Linker-CBDcipA-linker fused to MaoA in RFC25

BBa_K1615076
BBa_K1615076 Version 1 (Component)
TVEL5 fused to CBDclos in RFC25

BBa_K1615075
BBa_K1615075 Version 1 (Component)
CBDclos fused to TVEL5 in RFC25

BBa_K1321356
BBa_K1321356 Version 1 (Component)
sfGFP fused to CBDclos driven by LacI

TVEL5
BBa_K1615067 Version 1 (Component)
Laccase TVEL5 in RFC25

BBa_K1321094
BBa_K1321094 Version 1 (Component)
CBDclos fused to Phytochelatin (PC) EC20

BBa_K1321353
BBa_K1321353 Version 1 (Component)
NiBP fused to CBDclos driven by T7

OmpA
BBa_K103006 Version 1 (Component)
OmpA outer membrane protein A fused to linker; displays proteins on cell surface

BBa_K1321342
BBa_K1321342 Version 1 (Component)
sfGFP fused to CBDcex in RFC 25

mRFP
BBa_K1615089 Version 1 (Component)
mRFP RFC25