Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
SEGA021SEGA021 Version 1 (Component)natural linear DNA.
SEGA022SEGA022 Version 1 (Component)natural linear DNA.
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_K1615005BBa_K1615005 Version 1 (Component)MorA fused to Linker+dCBD in RFC25
BBa_K1615004BBa_K1615004 Version 1 (Component)Linker+dCBD fused to MorA in RFC25
BBa_K1321348BBa_K1321348 Version 1 (Component)sfGFP fused to dCBD with linker in RFC 25
BBa_K1321345BBa_K1321345 Version 1 (Component)NiBP fused to dCBD with linker in RFC 25
OmpABBa_K103006 Version 1 (Component)OmpA outer membrane protein A fused to linker; displays proteins on cell surface
BBa_K1321120BBa_K1321120 Version 1 (Component)SmtA metallothionein fused to linker-dCBD
BBa_K1615027BBa_K1615027 Version 1 (Component)MaoA fused to Linker+dCBD in RFC25
BBa_K1615050BBa_K1615050 Version 1 (Component)HerE fused to Linker+dCBD in RFC25
BBa_K1615093BBa_K1615093 Version 1 (Component)Linker+dCBD fused to mRFP in RFC25
BBa_K1615026BBa_K1615026 Version 1 (Component)Linker+dCBD fused to MaoA in RFC25
BBa_K1615071BBa_K1615071 Version 1 (Component)Linker+dCBD fused to TVEL5 in RFC25
BBa_K1615094BBa_K1615094 Version 1 (Component)mRFP fused to Linker+dCBD in RFC25
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_K1615011BBa_K1615011 Version 1 (Component)MorA fused to Linker-CBDcipA-linker in RFC25
BBa_K1615033BBa_K1615033 Version 1 (Component)MorA fused to Linker-CBDcipA-linker in RFC25
BBa_K1615010BBa_K1615010 Version 1 (Component)Linker-CBDcipA-linker fused to MorA in RFC25
BBa_K1615002BBa_K1615002 Version 1 (Component)CBDcenA+Linker fused to MorA in RFC25
BBa_K1615003BBa_K1615003 Version 1 (Component)MorA fused to CBDcenA+Linker in RFC25
BBa_K1615072BBa_K1615072 Version 1 (Component)TVEL5 fused to Linker+dCBD in RFC25
MorABBa_K1615000 Version 1 (Component)Morphine-6-dehydrogenase RFC25
CBDcipABBa_K1615111 Version 1 (Component)CBDcipA with N and C-terminal linker in RFC25
BBa_K1615008BBa_K1615008 Version 1 (Component)CBDclos fused to MorA in RFC25
BBa_K1615009BBa_K1615009 Version 1 (Component)MorA fused to CBDclos in RFC25
BBa_K1615007BBa_K1615007 Version 1 (Component)MorA fused to CBDcex in RFC25
BBa_K1615006BBa_K1615006 Version 1 (Component)CBDcex fused to MorA in RFC25
HerEBBa_K1615045 Version 1 (Component)Heroin Esterase in RFC25
BBa_K1321090BBa_K1321090 Version 1 (Component)Phytochelatin (PC) EC20 + Linker-dCBD
BBa_K1321100BBa_K1321100 Version 1 (Component)Phytochelatin (PC) EC20 fused to linker-dCBD with T7 promoter
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
TVEL5BBa_K1615067 Version 1 (Component)Laccase TVEL5 in RFC25