ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

GFP report
BBa_E0240 Version 1 (Component)
GFP generator

GFP genera
BBa_E0840 Version 1 (Component)
GFP generator

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_I746350
BBa_I746350 Version 1 (Component)
ogr activator from P2 phage

LuxR
BBa_I0462 Version 1 (Component)
luxR Protein Generator

BBa_J13002
BBa_J13002 Version 1 (Component)
TetR repressed POPS/RIPS generator

RFC 37
BBa_K245119 Version 1 (Component)
P2

BBa_I746104
BBa_I746104 Version 1 (Component)
P2 promoter in agr operon from S. aureus

BBa_I746361
BBa_I746361 Version 1 (Component)
PO promoter from P2 phage

BBa_K081014
BBa_K081014 Version 1 (Component)
RFP protein generator - PoPS->RFP

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K274370
BBa_K274370 Version 1 (Component)
PoPS -> P2 ogr - PF promoter -> PoPS

BBa_I746313
BBa_I746313 Version 1 (Component)
arabinose induced expression of P2 ogr and mRFP

BBa_I746372
BBa_I746372 Version 1 (Component)
P2 ogr inducing PP promoter

BBa_I746371
BBa_I746371 Version 1 (Component)
P2 ogr inducing PO promoter

BBa_I746370
BBa_I746370 Version 1 (Component)
P2 ogr inducing PF promoter

BBa_I746360
BBa_I746360 Version 1 (Component)
PF promoter from P2 phage

BBa_I746340
BBa_I746340 Version 1 (Component)
P2 ogr generator

BBa_K274374
BBa_K274374 Version 1 (Component)
PoPS -> P2 ogr - Psid promoter -> PoPS

BBa_K274371
BBa_K274371 Version 1 (Component)
PoPS -> P2 ogr - PO promoter -> PoPS

BBa_I746375
BBa_I746375 Version 1 (Component)
P2 ogr inducing PLL promoter

BBa_I746105
BBa_I746105 Version 1 (Component)
GFP with agr P2 promoter

BBa_K359003
BBa_K359003 Version 1 (Component)
Agr P2 with RFP

BBa_I0466
BBa_I0466 Version 1 (Component)
RhlR Protein Generator

Ogr
BBa_K242000 Version 1 (Component)
Late P2 transcription activator ogr

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

BBa_K1042012
BBa_K1042012 Version 1 (Component)
Cadmium Promoter + P2 ogr activator

BBa_K516022
BBa_K516022 Version 1 (Component)
AiiA protein generator TERM+ RBS+(B0032)

BBa_I746307
BBa_I746307 Version 1 (Component)
P2 ogr under control of pBAD/araC promoter

BBa_J119029
BBa_J119029 Version 1 (Component)
P2 Promoter - High efficiency

BBa_I1466
BBa_I1466 Version 1 (Component)
RhlR protein generator (LVA-)

BBa_K081012
BBa_K081012 Version 1 (Component)
GFP protein generator - PoPS->GFP

BBa_I746374
BBa_I746374 Version 1 (Component)
P2 ogr inducing Psid promoter

BBa_K145201
BBa_K145201 Version 1 (Component)
INPUT TetR generator