Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

eyfp
BBa_E0030 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_E0420
BBa_E0420 Version 1 (Component)
ECFP (RBS+ LVA- TERM) (B0034.E0020.B0015)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

P&E
BBa_S03353 Version 1 (Component)
PSPO2E connected to E0430

BBa_E0432
BBa_E0432 Version 1 (Component)
EYFP (RBS+ LVA+ TERM) (B0034.E0032.B0015)

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

B&E
BBa_S03359 Version 1 (Component)
B0015 connected to E0420

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

BBa_I6032
BBa_I6032 Version 1 (Component)
Promoter O_H Test R0040.E0430

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

PSPO
BBa_S03351 Version 1 (Component)
PSPO2E

BBa_S03176
BBa_S03176 Version 1 (Component)
R0011.E0420.R0040.E0430

BBa_I6031
BBa_I6031 Version 1 (Component)
Promoter O_H Test R0011.E0430

i&e
BBa_S03352 Version 1 (Component)
i12007 connected to E0840

B&I
BBa_S03358 Version 1 (Component)
B0015 connected to I13521

BBa_E0615
BBa_E0615 Version 1 (Component)
I0500.Q04530.E0430

BBa_E0434
BBa_E0434 Version 1 (Component)
B0034.E0034.B0015

BBa_I6046
BBa_I6046 Version 1 (Component)
Promoter O_H Test R0065.E0430

B&TraJ F
BBa_S03357 Version 1 (Component)
B0034 connected to TraJ F

B&TraJ
BBa_S03356 Version 1 (Component)
B0034 connected to TraJ R

BBa_K783020
BBa_K783020 Version 1 (Component)
MoClo converted version of BBa_B0015

BBa_I766207
BBa_I766207 Version 1 (Component)
PspOMI

BBa_I6300
BBa_I6300 Version 1 (Component)
QPI Curve Test I0500.E0420.I0500.E0430

pTG262-BB
BBa_I742123 Version 1 (Component)
Multi-host vector pTG262 converted to BioBrick vector

BBa_I13023
BBa_I13023 Version 1 (Component)
QPI Test Construct Intermediate (Q01400.E0430)

BBa_I6058
BBa_I6058 Version 1 (Component)
Promoter O_H Test I0500.E0430

BBa_I6101
BBa_I6101 Version 1 (Component)
Promoter O_H Test R0071.E0430

BBa_I6040
BBa_I6040 Version 1 (Component)
Promoter O_H Test R0053.E0430

BBa_I6103
BBa_I6103 Version 1 (Component)
Promoter O_H Test R0074.E0430

BBa_I6106
BBa_I6106 Version 1 (Component)
Promoter O_H Test R0078.E0430

BBa_I6056
BBa_I6056 Version 1 (Component)
Promoter O_H Test R1062.E0430

BBa_I6108
BBa_I6108 Version 1 (Component)
Promoter O_H Test R0080.E0430

BBa_I6042
BBa_I6042 Version 1 (Component)
Promoter O_H Test R0062.E0430

BBa_I6107
BBa_I6107 Version 1 (Component)
Promoter O_H Test R0079.E0430

BBa_I6105
BBa_I6105 Version 1 (Component)
Promoter O_H Test R0077.E0430