Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

pSB1C3
pSB1C3 Version 1 (Component)
High copy BioBrick assembly plasmid

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_I739001
BBa_I739001 Version 1 (Component)
Constitutive expression cassette for TetR +LVA (J23100.B0034.C0040.B0015)

BBa_I732017
BBa_I732017 Version 1 (Component)
lacZ full-length (RBS+ TERM-)

LRLa
BBa_I732101 Version 1 (Component)
LRLa

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_I732018
BBa_I732018 Version 1 (Component)
lacZ alpha fragment (RBS+ TERM-)

BBa_J64101
BBa_J64101 Version 1 (Component)
ColE1 biobrick plasmid with backward terminator

pSB6A1
pSB6A1 Version 1 (Component)
pBR322 converted to BioBrick vector (formally BBa_I739201)

BBa_I732019
BBa_I732019 Version 1 (Component)
lacZ full-length (RBS+ TERM+)

Pnot(O55)
BBa_I732205 Version 1 (Component)
NOT Gate Promoter Family Member (D001O55)

BBa_I732081
BBa_I732081 Version 1 (Component)
Tet repressor (RBS+ LVA- TERM-)

BBa_I732801
BBa_I732801 Version 1 (Component)
LRLa (RBS+, TERM-)

BBa_I732904
BBa_I732904 Version 1 (Component)
R0040 B0015

BBa_I732902
BBa_I732902 Version 1 (Component)
R0010 I732020

BBa_I732903
BBa_I732903 Version 1 (Component)
R0011 I732020

BBa_I739101
BBa_I739101 Version 1 (Component)
Double Promoter (constitutive / TetR, negative)

pSB4C1
pSB4C1 Version 1 (Component)
pCK01 converted into BioBrick vector (formerly BBa_I739202)

Pnot(O11)
BBa_I732201 Version 1 (Component)
NOT Gate Promoter Family Member (D001O11)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

lacIq
BBa_I732001 Version 1 (Component)
LacIq repressor (LVA-)

Pnot(O1wt1
BBa_I732200 Version 1 (Component)
NOT Gate Promoter Family Member (D001O1wt1)

Pnot(O16)
BBa_I732271 Version 1 (Component)
Promoter Family Member with Hybrid Operator (D001O16)

NAND2616
BBa_I732301 Version 1 (Component)
NAND Candidate (U073O26D001O16)

pSB3K1
pSB3K1 Version 1 (Component)
pACYC177 converted into BioBrick vector (formerly BBa_I739202)

BBa_I739205
BBa_I739205 Version 1 (Component)
pGA15

BBa_I739301
BBa_I739301 Version 1 (Component)
JM101

BBa_I739203
BBa_I739203 Version 1 (Component)
pBR322BB2

U097O11+D0
BBa_I732401 Version 1 (Component)
Promoter Family Member (U097O11+D062NUL)

Pnot(O33)
BBa_I732203 Version 1 (Component)
NOT Gate Promoter Family Member (D001O33)

Pnot(O66)
BBa_I732206 Version 1 (Component)
NOT Gate Promoter Family Member (D001O66)

Pnot(O44)
BBa_I732204 Version 1 (Component)
NOT Gate Promoter Family Member (D001O44)

Pnot(O22)
BBa_I732202 Version 1 (Component)
NOT Gate Promoter Family Member (D001O22)

Pnot(O77)
BBa_I732207 Version 1 (Component)
NOT Gate Promoter Family Member (D001O77)

BBa_I739021
BBa_I739021 Version 1 (Component)
Single regulated polycistronic P22 cII +LVA / EYFP +LVA expression cassette

BBa_I729001
BBa_I729001 Version 1 (Component)
mutant LuxR (Sensitive)

BBa_I716201
BBa_I716201 Version 1 (Component)
[rbs][ATG]