SynBioHub

Public

iGEM Feature Libraries
igem_feature_libraries_collection Version 1 (Unknown)
A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Public

Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Unknown)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Public

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

BBa_K1092101
BBa_K1092101 Version 1 (Component)
ssDsbA-PDZ Ligand

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BBa_K1092007
BBa_K1092007 Version 1 (Component)
ssDsbA-PDZ Ligand-Voltage Switch

Public

BBa_K1092102
BBa_K1092102 Version 1 (Component)
ssDsbA-PDZ Domain

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BBa_K1092009
BBa_K1092009 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-Voltage Switch

Public

BBa_K1462502
BBa_K1462502 Version 1 (Component)
PDZ domain + Linker

Public

BBa_K1092025
BBa_K1092025 Version 1 (Component)
T7-RBS -ssDsbA-PDZ Ligand-Voltage Switch-Laccase

Public

BBa_J04500
BBa_J04500 Version 1 (Component)
IPTG inducible promoter with RBS

Public

BBa_K1092008
BBa_K1092008 Version 1 (Component)
ssDsbA-PDZ Domain-Voltage Switch

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BBa_K1092023
BBa_K1092023 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-Voltage Switch-RFP C terminus

Public

BBa_K1092010
BBa_K1092010 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-Voltage Switch

Public

BBa_K1462480
BBa_K1462480 Version 1 (Component)
PDZ Ligand

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BBa_K1092026
BBa_K1092026 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-Voltage Switch-Dioxygenase

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BBa_K1092011
BBa_K1092011 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand

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BBa_K771003
BBa_K771003 Version 1 (Component)
Membrane Anchor 3 :ssDsbA-PDZ Ligand-LGT-SH3 Ligand

Public

BBa_K1092015
BBa_K1092015 Version 1 (Component)
ssDsbA-PDZ Ligand-FL3 Lgt FL3

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BBa_K1092024
BBa_K1092024 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-Voltage Switch-RFP N terminus

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BBa_K1092019
BBa_K1092019 Version 1 (Component)
ssDsbA-PDZ Ligand-FL3 Lgt FL3-Laccase

Public

BBa_K1092016
BBa_K1092016 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-FL3 Lgt FL3

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BBa_K1092006
BBa_K1092006 Version 1 (Component)
Voltage sensor peptide

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BBa_K1092020
BBa_K1092020 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-FL3 Lgt FL3-Laccase

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BBa_K1092012
BBa_K1092012 Version 1 (Component)
RBS-ssDsbA-PDZ Domain

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BBa_K1497026
BBa_K1497026 Version 1 (Component)
PDZ-Domain

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BBa_K1092017
BBa_K1092017 Version 1 (Component)
ssDsbA-PDZ Domain-FL3 Lgt FL3

Public

//cds/ligand
cds_ligand Version 1 (Collection)

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eYFP_PDZli
BBa_K1602039 Version 1 (Component)
eYFP with C-terminal PDZ ligand and RBS BBa_B0034

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BBa_K1470005
BBa_K1470005 Version 1 (Component)
engineered PDZ domain (ePDZ)

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BBa_K1462390
BBa_K1462390 Version 1 (Component)
pTDH3+CA+PDZ-ligand+tADH1

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BBa_K1092013
BBa_K1092013 Version 1 (Component)
T7-RBS-Voltage Switch

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BBa_K771005
BBa_K771005 Version 1 (Component)
Membrane Anchor 5:ssDsbA-VVD-LGT-GBD Ligand

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BBa_K1092021
BBa_K1092021 Version 1 (Component)
ssDsbA-PDZ Domain-FL3 Lgt FL3-Dioxygenase

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pdc
BBa_K273000 Version 1 (Component)
Pyruvate decarboxylase (pdc) from <i>Z. Mobilis</i> ATCC 29191

Public

BBa_K771004
BBa_K771004 Version 1 (Component)
Membrane Anchor 4 : ssDsbA-PDZ Domain-LGT-GBD Domain

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BBa_K1462470
BBa_K1462470 Version 1 (Component)
SH3 ligand

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BBa_K1092018
BBa_K1092018 Version 1 (Component)
T7-RBS -ssDsbA-PDZ Domain-FL3 Lgt FL3

Public

eYFP_PDZ g
BBa_K1602042 Version 1 (Component)
Inducible generator of eYFP with C-terminal PDZ ligand

Public

LigA
BBa_K525710 Version 1 (Component)
DNA ligase from Escherichia coli (LigA) with PT7, RBS and His-tag

Public

pdc
BBa_K173016 Version 1 (Component)
pyruvate decarboxylase from Z. mobilis (codon optimized for E. coli)

Public

BBa_K1092022
BBa_K1092022 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-FL3 Lgt FL3-Dioxygenase

Public

eYFP_SH3li
BBa_K1602038 Version 1 (Component)
eYFP with C-terminal SH3 ligand and RBS BBa_B0034

Public

BBa_J64101
BBa_J64101 Version 1 (Component)
ColE1 biobrick plasmid with backward terminator

Public

BBa_K1462400
BBa_K1462400 Version 1 (Component)
pGAL1+PRK+GBD-ligand+ADH1+pTDH3+RuBisCo+SH3-ligand+ADH1+pTDH3+CA+PDZ-ligand+ADH1

Public

eYFP_GBDli
BBa_K1602037 Version 1 (Component)
eYFP with C-terminal GBD ligand and RBS BBa_B0034

Public

BBa_K771101
BBa_K771101 Version 1 (Component)
ssDsbA-Bla

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