P-alsT
BBa_K818300 Version 1 (Component)
Promoter alsT, repressed by TnrA during conversion of NH4 to Glutamine in B. subtilis.

BBa_K759001
BBa_K759001 Version 1 (Component)
Aggregation Module inducible by arabinose in E.coli.

BBa_K863020
BBa_K863020 Version 1 (Component)
bhal laccase from Bacillus halodurans with T7 promoter, RBS and His-tag

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Intein_assisted_Bisection_Mapping
Intein_assisted_Bisection_Mapping_collection Version 1 (Collection)
Split inteins are powerful tools for seamless ligation of synthetic split proteins. Yet, their use remains limited because the already intricate split site identification problem is often complicated by the requirement of extein junction sequences. To address this, we augmented a mini-Mu transposon-based screening approach and devised the intein-assisted bisection mapping (IBM) method. IBM robustly revealed clusters of split sites on five proteins, converting them into AND or NAND logic gates. We further showed that the use of inteins expands functional sequence space for splitting a protein. We also demonstrated the utility of our approach over rational inference of split sites from secondary structure alignment of homologous proteins. Furthermore, the intein inserted at an identified site could be engineered by the transposon again to become partially chemically inducible, and to some extent enabled post-translational tuning on host protein function. Our work offers a generalizable and systematic route towards creating split protein-intein fusions and conditional inteins for protein activity control.

SEGA
SEGA_collection Version 1 (Collection)
In the Standardized Genome Architecture (SEGA), genomic integration of DNA fragments is enabled by λ-Red recombineering and so-called landing pads that are a common concept in synthetic biology and typically contain features that i) enable insertion of additional genetic elements and ii) provide well-characterized functional parts such as promoters and genes, and iii) provides insulation against genome context-dependent effects. The SEGA landing pads allow for reusable homology regions and time-efficient construction of parallel genetic designs with a minimal number of reagents and handling steps. SEGA bricks, typically synthetic DNA or PCR fragments, are integrated on the genome simply by combining the two reagents (i.e. competent cells and DNA), followed by incubation steps, and successful recombinants are identified by visual inspection on agar plates. The design of the SEGA standard was heavily influenced by the Standard European Vector Architecture (SEVA). SEGA landing pads typically hosts two major genetic “control elements” that influence gene expression on the transcriptional (C1), and translational (C2) level. Furthermore, landing pads contain gadgets such as selection and counterselection markers.

Cello E. Coli Parts
Eco1C1G1T1_collection Version 1 (Collection)
These are the Cello parts for E. Coli circuits

BBa_K098011
BBa_K098011 Version 1 (Component)
E. coli ompR, expressed at low level

BBa_K112245
BBa_K112245 Version 1 (Component)
{pAH57 promoter}{rbs.xis.int!} inserted into K112995 plasmid

BBa_K112246
BBa_K112246 Version 1 (Component)
{pAH57 promoter}{rbs.xis.int!}{rbs.ihfA!}{rbs.ihfB!} inserted into K112995 plasmid

BBa_K112247
BBa_K112247 Version 1 (Component)
{pAH57 promoter}{rbs.xis.int!} inserted into K112950 plasmid

BBa_K112248
BBa_K112248 Version 1 (Component)
{pAH57 promoter}{rbs.xis.int!}{rbs.ihfA!}{rbs.ihfB!} inserted into K112950 plasmid

RBS.TetR
BBa_I15040 Version 1 (Component)
RBS.TetR from pASKIBA3

BBa_K116601
BBa_K116601 Version 1 (Component)
HtlB (ftsH) coding region from E. coli

BBa_K112372
BBa_K112372 Version 1 (Component)
{rbs.BgIII}{b1006}

BBa_K112130
BBa_K112130 Version 1 (Component)
Xis.Int with RBS, TrfA with RBS and terminator

BBa_K152006
BBa_K152006 Version 1 (Component)
frdBCD operon from E. coli (missing the first gene fumarate oxidase)

BBa_C0361
BBa_C0361 Version 1 (Component)
luxI (+LVA) - Codon-optimised for E.coli

BBa_C0378
BBa_C0378 Version 1 (Component)
lasI (+LVA) - Codon-optimised for E.coli

BBa_C0362
BBa_C0362 Version 1 (Component)
luxR - codon-optimised for E.coli

BBa_Z0301
BBa_Z0301 Version 1 (Component)
Venus YFP - E. coli codon optimized

BBa_J70029
BBa_J70029 Version 1 (Component)
RBS + mCherry gene, optimized for expression in Me. florum and E. coli

BBa_J70300
BBa_J70300 Version 1 (Component)
Strong Me. florum promoter

BBa_J70301
BBa_J70301 Version 1 (Component)
Heat shock inducible promoter for Me. florum

BBa_M10092
BBa_M10092 Version 1 (Component)
{Pbad.rbs.prepro˃} For arabinose induced secretion

BBa_M10093
BBa_M10093 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag˃}

BBa_M10212
BBa_M10212 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{˂AG4˃}{˂upaG_short!}{dblTerm}

BBa_M10217
BBa_M10217 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{˂AG4˃}{˂TshA!}{dblTerm}

BBa_M10213
BBa_M10213 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{˂AG4˃}{˂Ag43_short!}{dblTerm}

BBa_M10215
BBa_M10215 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{<AG4>}{<ehaB!]{dblTerm}

BBa_M10210
BBa_M10210 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{AG4}{CPG_L6!}{dblTerm}

BBa_M10214
BBa_M10214 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{&#706;AG4&#707;}{&#706;espP(beta)!}{dblTerm}

BBa_M10216
BBa_M10216 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{AG4}{CPompX!}{dblTerm}

BBa_M10225
BBa_M10225 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{&#706;GS5-IILK&#707;}{&#706;TshA!}{dblTerm}

BBa_M10211
BBa_M10211 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{&#706;AG4&#707;}{&#706;eCPX!}{dblTerm}

BBa_M10221
BBa_M10221 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}}{&#706;GS5-IILK&#707;}{&#706;Ag43_short!}{dblTerm}

BBa_M10219
BBa_M10219 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{&#706;GS5-IILKt&#707;} {&#706;eCPX!}{dblTerm}

BBa_M10223
BBa_M10223 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{<GS5-IILK>}{<ehaB!]{dblTerm}

BBa_M10220
BBa_M10220 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{&#706;GS5-IILK&#707;}{&#706;upaG_short!}{dblTerm}

BBa_M10218
BBa_M10218 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{GS5-IILK}{CPG_L6!}{dblTerm}

BBa_M10224
BBa_M10224 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{GS5-IILK}{CPompX!}{dblTerm}

BBa_M10222
BBa_M10222 Version 1 (Component)
{Pbad.rbs.prepro.StrepTag}{&#706;GS5-IILK&#707;}{&#706;espP(beta)!}{dblTerm}

BBa_K251000
BBa_K251000 Version 1 (Component)
coding sequene for E.coli heat shock protein hsp15 (example/ european meeting)

BBa_P101101
BBa_P101101 Version 1 (Component)
SAMT RBS.ORF.Term

BBa_P101102
BBa_P101102 Version 1 (Component)
BAMT RBS.ORF.Term

BBa_P101103
BBa_P101103 Version 1 (Component)
JMT RBS.ORF.Term (PCR)

BBa_P101104
BBa_P101104 Version 1 (Component)
JMT RBS.ORF.Term (Synth)

BBa_P101105
BBa_P101105 Version 1 (Component)
SAAT RBS.ORF.Term

BBa_P101106
BBa_P101106 Version 1 (Component)
BEAT RBS.ORF.Term

BBa_P101107
BBa_P101107 Version 1 (Component)
EHT1 RBS.ORF.Term