SacB-HE

BBa_K143039 Version 1

Component

Source:
http://parts.igem.org/Part:BBa_K143039
Generated By: https://synbiohub.org/public/igem/igem2sbol/1
Created by: Qin Qi
Date created: 2008-09-16 11:00:00
Date modified: 2015-05-08 01:10:24

SacB-Human Elastin (EP20-24-24) Fusion Protein



Types
DnaRegion

Roles
Coding

CDS

Sequences BBa_K143039_sequence (Version 1)

Description

Elastin is a polymeric extracellular matrix protein found in tissues that require the ability to extend and recoil. Examples of elastin containing tissues include arteries, lungs, ligaments and skin.

Construct EP20-24-24 for human elastin polypeptide consists of distinct exons which code for alternating hydrophobic regions and crosslinking domains from the human elastin polypeptide gene 1.

Under appropriate conditions of temperature and ionic strength, elastin polypeptide undergoes a self-aggregation process known as coacervation. Coacervation is usually induced by an increase in temperature and causes the protein to separate from the solution as a second phase. Unlike most proteins which undergo denaturation when the temperature of the solution increases, elastin polypeptides become more ordered through coacervation 2.

SacB is a signal peptide used in the Sec-SRP (secretory signal recognition particle) pathway by B. subtilis. Signal peptides are responsible for directing preproteins (secretory proteins with a signal peptide region attached) through an appropriate secretory pathway. In the case of the Sec-SRP signal peptide, they direct preproteins from the cytoplasm into the growth medium. SacB has been successfully used in the secretion of heterologous proteins such as acid-stable α-amylase, cystatin and interleukin-3 by B.subtilis 3.

Notes

BioBrick standard was applied to the SacB-Human Elastin(EP20-24-24) Fusion Protein.

Source

All exons in EP20-24-24 are derived from the human elastin polypeptide gene. EP20-24-24 was used to study the effect of various combinations of exons on coacervation of elastin polypeptide. SacB was identified from the initial part of certain preprotein genes that utilises the the Sec-SRP secretory pathway 4. Both components were synthesised as a fusin protein by GeneArt.

Sequence Annotation Location Component / Role(s)
SacB
start
stop
stop
Human Elastin (EP20-24-24)
1,96
1,3
697,699
694,696
97,693
feature/cds CDS
start_codon feature/start
stop_codon feature/stop
feature/stop stop_codon
feature/cds CDS
igem#experience
None
 
igem#sampleStatus
It's complicated
igem#status
Planning
 
synbiohub#ownedBy
user/james
 
synbiohub#ownedBy
user/myers
 
synbiohub#topLevel
BBa_K143039/1