BBa_K864444

BBa_K864444 Version 1

Component

Source:
http://parts.igem.org/Part:BBa_K864444
Generated By: https://synbiohub.org/public/igem/igem2sbol/1
Created by: Joel ??s
Date created: 2012-09-24 11:00:00
Date modified: 2015-05-08 01:13:37

RFP-Linker-SYFP2



Types
DnaRegion

Roles
engineered_region

Composite

Sequences BBa_K864444_sequence (Version 1)

Description

Use this part to insert any 5?????TR of your gene of interest to screen for downregulation of your gene with small RNA. PCR amplify your 5???UTR with EcoRI and BamHI and clone into any backbone carrying this part. Digest whis part with EcoRI and BamHI and as RFP is replaced, this part functions as a red/white screening system. This allows you to create a reporter system with a fluorescent marker for screening for functional small RNAs.

SYFP2 BBa_K864100 is situated downstrean of the RFP BBa_J04450 and is connected in frame with a 12 aa glycine-serine repeated linker BBa_J18922, to prevent folding distruptions in the YFP or the 5???UTR. The first 6 nt of the glycine-serine linker is a BamHI restriction site (GGATCC), which translates into glycine-serine in E.Coli.

When screening for working small RNAs, it's recommended to include the first 15 codons of the gene of interest.

Notes

-

Source

Constructed from SYFP2 BBa_K864100, linker BBa_J18922 and RFP BBa_J04450

Sequence Annotation Location Component / Role(s)
RFP J04450
Plac
B0034
RFP
B0012
B0010
Linker
BamHI
SYFP2
1,1068
1,200
209,220
227,681
1029,1069
941,1020
1076,1105
1070,1075
1106,1825
feature/misc sequence_feature
feature/promoter promoter
ribosome_entry_site feature/rbs
CDS feature/cds
feature/stop stop_codon
stop_codon feature/stop
sequence_feature feature/misc
feature/misc sequence_feature
CDS feature/cds
igem#experience
Works
 
igem#partStatus
Released HQ 2013
igem#sampleStatus
In stock
igem#status
Available
 
synbiohub#ownedBy
user/james
 
synbiohub#ownedBy
user/myers
 
synbiohub#topLevel
BBa_K864444/1