Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K209402BBa_K209402 Version 1 (Component)AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]
BBa_K209400BBa_K209400 Version 1 (Component)AarI B-C part, hM4D
cheZBBa_K629003 Version 1 (Component)cheZ, chemotaxis regulator, protein phosphatase for CheY
tetA(C)fBBa_J31007 Version 1 (Component)tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]
BBa_K209415BBa_K209415 Version 1 (Component)AarI B-C part, hM2D
BBa_K209401BBa_K209401 Version 1 (Component)AarI B-C part, Rs1.3
BBa_K209406BBa_K209406 Version 1 (Component)AarI C-D part, Beta Pix
tetA(C)bBBa_J31006 Version 1 (Component)tetracycline resistance protein TetA(C) (backwards) [cf. BBa_J31007]
BBa_K209404BBa_K209404 Version 1 (Component)AarI C-D part, ActA (30-612)
BBa_K209410BBa_K209410 Version 1 (Component)AarI C-D part, ActA (255-392)
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
BBa_K422008BBa_K422008 Version 1 (Component)CheY (AarI C-part)
BBa_K209408BBa_K209408 Version 1 (Component)AarI C-D part, Intersectin (ITSN)
BBa_K209411BBa_K209411 Version 1 (Component)AarI C-D part, Lamellipodin (LPD) (775-1250)
BBa_K209409BBa_K209409 Version 1 (Component)AarI C-D part, Tuba
BBa_K209006BBa_K209006 Version 1 (Component)Aar1 C-D part, Dd5P2 (aa435-787)
BBa_K209413BBa_K209413 Version 1 (Component)AarI C-D part, Vav
BBa_K422006BBa_K422006 Version 1 (Component)CheR (AarI C-part)
BBa_K422004BBa_K422004 Version 1 (Component)CheB (AarI C-part)
BBa_K209399BBa_K209399 Version 1 (Component)AarI A-D acceptor vector
BBa_K209477BBa_K209477 Version 1 (Component)AarI B-C part, DOR
BBa_K422007BBa_K422007 Version 1 (Component)CheY (AarI A-part)
BBa_K209015BBa_K209015 Version 1 (Component)Aar1 C-D part, Inp54p
BBa_K209010BBa_K209010 Version 1 (Component)Aar1 C-D part, RasC da (no CAAX) (Dictyostelium discoideum)
BBa_K209012BBa_K209012 Version 1 (Component)Aar1 C-D part, RasG dn (no CAAX) (Dictyostelium discoideum)
BBa_K209011BBa_K209011 Version 1 (Component)Aar1 C-D part, RasG da (no CAAX) (Dictyostelium discoideum)
cheYBBa_C0020 Version 1 (Component)CheY "tumbling" chemotaxis coding sequence
BBa_K209475BBa_K209475 Version 1 (Component)AarI C-D part, Actinin1ABD
BBa_K209009BBa_K209009 Version 1 (Component)Aar1 C-D part, SHIP1 (aa364-826) (Dictyostelium discoideum)
BBa_K209023BBa_K209023 Version 1 (Component)Aar1 C-D part, FKBP
BBa_K209019BBa_K209019 Version 1 (Component)Aar1 A-B part, PLCdelta-PH (Dictyostelium discoideum)
BBa_K209007BBa_K209007 Version 1 (Component)Aar1 C-D part, PI3K1 (full length) (Dictyostelium discoideum)
cheBBBa_C0024 Version 1 (Component)CheB chemotaxis coding sequence (protein glutamate methylesterase)
BBa_K209476BBa_K209476 Version 1 (Component)AarI C-D part, Villin headpiece
BBa_K209474BBa_K209474 Version 1 (Component)AarI C-D part, 3xSTOP-FKBP
BBa_K422005BBa_K422005 Version 1 (Component)CheR (AarI A-part)
BBa_K422003BBa_K422003 Version 1 (Component)CheB (AarI A-part)
BBa_K209018BBa_K209018 Version 1 (Component)Aar1 A-B part, cAR1 (Dictyostelium discoideum)
BBa_K422012BBa_K422012 Version 1 (Component)Pif3 (AarI C-part)
BBa_K422013BBa_K422013 Version 1 (Component)PhyB (AarI C-part)
BBa_K422011BBa_K422011 Version 1 (Component)mreB (AarI C-part)
BBa_K209495BBa_K209495 Version 1 (Component)AarI B-C part, GRM2