Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
CD4 signalBBa_I712009 Version 1 (Component)CD4 signal peptide; localizes to plasma membrane
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_K1051105BBa_K1051105 Version 1 (Component)TOM40;targeting peptide to mitochondria outer membrane
BBa_K1051101BBa_K1051101 Version 1 (Component)Cox4 targeting peptide to mitochondria inner membrane
BBa_K1051102BBa_K1051102 Version 1 (Component)targeting peptide to mitochondria inner membrane
BBa_K1051100BBa_K1051100 Version 1 (Component)targeting peptide to mitochondria inner membrane
PelBBBa_J32015 Version 1 (Component)PelB leader sequence; directs protein to E. coli periplasmic membrane
BBa_K1051106BBa_K1051106 Version 1 (Component)targeting peptide to mitochondria outer membrane
BBa_K1051104BBa_K1051104 Version 1 (Component)VDAC1;targeting peptide to mitochondria outer membrane
BBa_K861010BBa_K861010 Version 1 (Component)FadD, an inner membrane-associated acyl-CoA synthase
OmpABBa_K103006 Version 1 (Component)OmpA outer membrane protein A fused to linker; displays proteins on cell surface
COX3 termiBBa_K809005 Version 1 (Component)Terminator of Yeast mitochondrial gene COX3
BBa_K1051108BBa_K1051108 Version 1 (Component)targeting peptide to mitochondria outer membrane;Tom20
BBa_K1051103BBa_K1051103 Version 1 (Component)TOM22, targeting peptide to mitochondria outer membrane
BBa_K1051107BBa_K1051107 Version 1 (Component)Tom70;targeting peptide to mitochondria outer membrane
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
TBBa_K896949 Version 1 (Component)promoter and MpV17 mitochondrial inner membrane protein
creDBBa_J64905 Version 1 (Component)creD inner membrane protein
BBa_K1051109BBa_K1051109 Version 1 (Component)targeting peptide to mitochondria matrix;MIA40
mtGFPBBa_K809001 Version 1 (Component)Mitochondrial GFP
BBa_J36835BBa_J36835 Version 1 (Component)Lipoprotein signal peptide
COX1 promoBBa_K809007 Version 1 (Component)Promoter of Yeast mitochondrial gene COX1/Oli1/15s rRNA
myristoilaBBa_I712026 Version 1 (Component)myristoilation signal sequence; anchors protein to membrane
BBa_K1051113BBa_K1051113 Version 1 (Component)ScSac3;targeting peptide to centrosome
BBa_K1051114BBa_K1051114 Version 1 (Component)H2A2;targeting peptide to nucleus
tetR inverBBa_Q04401 Version 1 (Component)TetR-derived transcriptional inverter
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_M1004BBa_M1004 Version 1 (Component)HlyD Membrane Protein
BBa_K177028BBa_K177028 Version 1 (Component)mitochondrial location signal from Cox gene
BBa_I746200BBa_I746200 Version 1 (Component)FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane.
CymABBa_K1748004 Version 1 (Component)Inner-membrane tetraheme c-type cytochrome CymA
BBa_K554002BBa_K554002 Version 1 (Component)HlyA secretion signal peptide
UPcox1BBa_K809003 Version 1 (Component)Up elements of cox1 gene