Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1321094
BBa_K1321094 Version 1 (Component)
CBDclos fused to Phytochelatin (PC) EC20

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K1321092
BBa_K1321092 Version 1 (Component)
Phytochelatin (PC) EC20 fused to CBDcex

BBa_K1321090
BBa_K1321090 Version 1 (Component)
Phytochelatin (PC) EC20 + Linker-dCBD

BBa_K1321114
BBa_K1321114 Version 1 (Component)
CBDclos fused to phytochelatin (PC) EC20 with LacI promoter

BBa_K1321101
BBa_K1321101 Version 1 (Component)
Phytochelatin (PC) EC20 fused to CBDclos with T7 promoter

BBa_K1321104
BBa_K1321104 Version 1 (Component)
CBDclos fused to Phytochelatin (PC) EC20 with T7 promoter

BBa_K1321111
BBa_K1321111 Version 1 (Component)
Phytochelatin (PC) EC20 fused with CBDclos with LacI promoter

BBa_K1321091
BBa_K1321091 Version 1 (Component)
Phytochelatin (PC) EC20 fused to CBDclos

BBa_K1321100
BBa_K1321100 Version 1 (Component)
Phytochelatin (PC) EC20 fused to linker-dCBD with T7 promoter

BBa_K1321112
BBa_K1321112 Version 1 (Component)
Phytochelatin (PC) EC20 fused to CBDcex with LacI promoter

BBa_K1321105
BBa_K1321105 Version 1 (Component)
CBDcex fused to Phytochelatin (PC) EC20 with T7 promoter

BBa_K1321110
BBa_K1321110 Version 1 (Component)
Phytochelatin (PC) EC20 fused to linker-dCBD with LacI

BBa_K1321115
BBa_K1321115 Version 1 (Component)
CBDcex fused to phytochelatin (PC) EC20 with LacI promoter

BBa_K1321005
BBa_K1321005 Version 1 (Component)
Synthetic Phytochelatin EC(20) RFC[25]

BBa_K1321002
BBa_K1321002 Version 1 (Component)
Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25

BBa_K1321095
BBa_K1321095 Version 1 (Component)
CBDcex fused to Phytochelatin (PC) EC20

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K1321097
BBa_K1321097 Version 1 (Component)
CBDcenA-linker fused to Phytochelatin (PC) EC20

BBa_K1321341
BBa_K1321341 Version 1 (Component)
sfGFP fused to CBDclos in RFC 25

BBa_K1321093
BBa_K1321093 Version 1 (Component)
Phytochelatin (PC) EC20 + Linker-CBDcipA-Linker

BBa_K1321096
BBa_K1321096 Version 1 (Component)
Linker-CBDcipA-Linker + Phytochelatin (PC) EC20

BBa_K1321343
BBa_K1321343 Version 1 (Component)
NiBP fused to CBDclos in RFC 25

BBa_K1321151
BBa_K1321151 Version 1 (Component)
metallothionein Fmt fused to CBDclos

BBa_K1321121
BBa_K1321121 Version 1 (Component)
Smt metallothionein fused to CBDclos

BBa_K1321154
BBa_K1321154 Version 1 (Component)
CBDclos fused to metallothionein Fmt

BBa_K1321346
BBa_K1321346 Version 1 (Component)
CBDclos fused to sfGFP in RFC 25

BBa_K1321356
BBa_K1321356 Version 1 (Component)
sfGFP fused to CBDclos driven by LacI

BBa_K1321117
BBa_K1321117 Version 1 (Component)
CBDcenA-linker fused to Phytochelatin (PC) EC20 with LacI promoter

BBa_K1321107
BBa_K1321107 Version 1 (Component)
CBDcen-linker fused to Phytochelatin (PC) EC20 with T7 promoter

BBa_K1321116
BBa_K1321116 Version 1 (Component)
Linker-cipA-linker + phytochelatin (PC) EC20 with LacI promoter

BBa_K1321353
BBa_K1321353 Version 1 (Component)
NiBP fused to CBDclos driven by T7

OmpA
BBa_K103006 Version 1 (Component)
OmpA outer membrane protein A fused to linker; displays proteins on cell surface

BBa_K1321102
BBa_K1321102 Version 1 (Component)
Phytochelatin (PC) EC20 + CBDcex with T7 promoter

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

BBa_K1321113
BBa_K1321113 Version 1 (Component)
Phytochelatin (PC) EC20 + linker-CBDcipA-linker with LacI promoter