SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
GFPBBa_E0040 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_J07061BBa_J07061 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa570-575
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_J07053BBa_J07053 Version 1 (Component)FecA::scFv internal fusion type 1 @ aa571
BBa_J07063BBa_J07063 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa566-577
BBa_J07062BBa_J07062 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa520-530
BBa_J07060BBa_J07060 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa522-532
BBa_J07048BBa_J07048 Version 1 (Component)FecA::scFv internal fusion type 1 @ aa155
BBa_J07049BBa_J07049 Version 1 (Component)FecA::scFv internal fusion type 1 @ aa176
BBa_J07052BBa_J07052 Version 1 (Component)FecA::scFv internal fusion type 1 @ aa527
BBa_J07054BBa_J07054 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa137-142
BBa_J07059BBa_J07059 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa526-532
BBa_J07056BBa_J07056 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa175-181
BBa_J07057BBa_J07057 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa177-183
BBa_J07055BBa_J07055 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa154-159
BBa_J07058BBa_J07058 Version 1 (Component)FecA::scFv internal fusion type 2 @ aa179-185
BBa_J07051BBa_J07051 Version 1 (Component)FecA::scFv internal fusion type 1 @ aa180
BBa_J07047BBa_J07047 Version 1 (Component)FecA::scFv internal fusion type 1 @ aa138
BBa_J07050BBa_J07050 Version 1 (Component)FecA::scFv internal fusion type 1 @ aa178
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_J07083BBa_J07083 Version 1 (Component)tetR promoter+rbs+scfv-FecA 571+rbs+FecI+rbs+FecR'+terminator
BBa_K208014BBa_K208014 Version 1 (Component)GFP (Silver Fusion)/Double Terminator
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
BBa_J07086BBa_J07086 Version 1 (Component)tetR promoter+rbs+scfv-FecA 567-576+rbs+FecI+rbs+FecR'+terminator
BBa_J07084BBa_J07084 Version 1 (Component)tetR promoter+rbs+scfv-FecA 176+rbs+FecI+rbs+FecR'+terminator
BBa_J07081BBa_J07081 Version 1 (Component)tetR promoter+rbs+scfv-FecA 527+rbs+FecI+rbs+FecR'+terminator
BBa_J07085BBa_J07085 Version 1 (Component)tetR promoter+rbs+scfv-FecA 522-532+rbs+FecI+rbs+FecR
BBa_J07082BBa_J07082 Version 1 (Component)tetR promoter+rbs+scfv-FecA 155+rbs+FecI+rbs+FecR'+terminator
BBa_I15010BBa_I15010 Version 1 (Component)cph8 (Cph1/EnvZ fusion)
BBa_E0044BBa_E0044 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212)
BBa_E0051BBa_E0051 Version 1 (Component)lacZa.GFP fusion
BBa_K125500BBa_K125500 Version 1 (Component)GFP fusion brick
Art175BBa_K1659000 Version 1 (Component)Artilysin Art-175, an antibacterial fusion protein
BBa_K300003BBa_K300003 Version 1 (Component)Phasin (PhaP) - internal domain
yfpBBa_K165005 Version 1 (Component)Venus YFP, yeast optimized for fusion
scFvBBa_K1933002 Version 1 (Component)anti-Norovirus GII.4 scFv
BBa_K209021BBa_K209021 Version 1 (Component)Aar1 A-B part, PI3K (aa170-290) (Dictyostelium discoideum)
BBa_K197019BBa_K197019 Version 1 (Component)TypeIII Needle scFv
BBa_K1632011BBa_K1632011 Version 1 (Component)fimE (wild-type)
BBa_J07025BBa_J07025 Version 1 (Component)ToxR'::scFv Fusion 2 (with promoter and rbs and terminator)
BBa_I746200BBa_I746200 Version 1 (Component)FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane.
BBa_K1632010BBa_K1632010 Version 1 (Component)fimB (wild-type)
fecA-prhABBa_K367006 Version 1 (Component)fecA-prhA fusion coding sequence
BBa_K082004BBa_K082004 Version 1 (Component)LacI- wild type
pET fusionBBa_K1122673 Version 1 (Component)Ethanol production module
BBa_K249006BBa_K249006 Version 1 (Component)Fusion EYFP with C-terminal Arginine Tag