Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J70435BBa_J70435 Version 1 (Component)Forward oligo part for testing J70428, J70429, J70430
BBa_J70437BBa_J70437 Version 1 (Component)Reverse oligo part for testing J70428, J70429, J70430
BBa_J70436BBa_J70436 Version 1 (Component)Forward oligo part for testing J70428, J70429, J70430
BBa_K209402BBa_K209402 Version 1 (Component)AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]
BBa_J70438BBa_J70438 Version 1 (Component)Part simulated by J70436&7 in combination with J70428,29,&30
Prm +BBa_I12006 Version 1 (Component)Modified lamdba Prm promoter (repressed by 434 cI)
BBa_J70519BBa_J70519 Version 1 (Component)formed by cutting J70423 with PsrI and adding annealed J70483 and J70484
BBa_J70427BBa_J70427 Version 1 (Component)R0010.J70400.E0020 or J70406.E0020
BBa_J70426BBa_J70426 Version 1 (Component)R0010.J70400.E0030 or J70406.E0030
BBa_J70434BBa_J70434 Version 1 (Component)R0010.J70428.E0020 or J70431.E0020
BBa_J70433BBa_J70433 Version 1 (Component)R0010.J70428.E0030 or J70431.E0030
BBa_J70432BBa_J70432 Version 1 (Component)R0010.J70428.E0040 or J70431.E0040
BBa_K209400BBa_K209400 Version 1 (Component)AarI B-C part, hM4D
BBa_I763026BBa_I763026 Version 1 (Component)LacI coding device regulated by pTetR
BBa_S03119BBa_S03119 Version 1 (Component)--Specify Parts List--
BBa_K209415BBa_K209415 Version 1 (Component)AarI B-C part, hM2D
BBa_K737017BBa_K737017 Version 1 (Component)This part conteins gvpC-20psi protein
BBa_J70042BBa_J70042 Version 1 (Component)6his part for use with BioScaffold parts ATG-6his-GGATCC (glycine serine)
BBa_J70036BBa_J70036 Version 1 (Component)A BioScaffold Part (Uses AarI) for Library Insert Preparation (see Part Design page)
BBa_J70521BBa_J70521 Version 1 (Component)hard codes sequence of J70516 into a part
BBa_J70486BBa_J70486 Version 1 (Component)gfp RBS, {0,5;15,10} family member - level 100 (forward oligo)
BBa_J70336BBa_J70336 Version 1 (Component)B1006.f.1: B1006 forward oligo part (single stranded)
BBa_J70496BBa_J70496 Version 1 (Component)gfp RBS, {0,5;15,10} family member - level 100000 (reverse oligo)
BBa_J70456BBa_J70456 Version 1 (Component)yfp RBS, {0,5;15,10} family member - B0030 simulator (forward oligo)
BBa_J70439BBa_J70439 Version 1 (Component)yfp RBS, {0,5;15,10} family member - level 10 (master sequence)
BBa_J70046BBa_J70046 Version 1 (Component)6his part for use with BioScaffold parts ATG-6 his-GATCC(glycine serine)-TAA
BBa_J70016BBa_J70016 Version 1 (Component)PpiI Right Testing Part
BBa_J70431BBa_J70431 Version 1 (Component)R0010.J70428
BBa_J70631BBa_J70631 Version 1 (Component)R0010-J70630, rbs and maltose binding protein added to J70423
BBa_J70031BBa_J70031 Version 1 (Component)Linker for BioScaffold Parts, example of Gamma BioScaffold part
BBa_T1001BBa_T1001 Version 1 (Component)Kill this part
BBa_J70476BBa_J70476 Version 1 (Component)R0010.B0030.E0040
BBa_J70416BBa_J70416 Version 1 (Component)R0010.E0031.B1002.E0021
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
BBa_K209401BBa_K209401 Version 1 (Component)AarI B-C part, Rs1.3
BBa_J70044BBa_J70044 Version 1 (Component)6his part for use with BioScaffold parts (G)GATCC(glycine serine)-6his-TAA
PcarBBa_K861171 Version 1 (Component)Pcar, synthetic promoter repressed by CRP
BBa_J64036BBa_J64036 Version 1 (Component)DH domain constitutively active +atg
BBa_K737016BBa_K737016 Version 1 (Component)This part conteins gvpA protein's coding sequence.
BBa_S04545BBa_S04545 Version 1 (Component)J70028:J70635
BBa_K1440088BBa_K1440088 Version 1 (Component)long parts consist of part2 and part3
BBa_J70082BBa_J70082 Version 1 (Component)Adds 6 his prefix, using BioScaffold part J70030 (PpiI)