Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

GFP report
BBa_E0240 Version 1 (Component)
GFP generator

GFP genera
BBa_E0840 Version 1 (Component)
GFP generator

Prm +
BBa_I12006 Version 1 (Component)
Modified lamdba Prm promoter (repressed by 434 cI)

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

i&e
BBa_S03352 Version 1 (Component)
i12007 connected to E0840

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

c-Myc
BBa_I712007 Version 1 (Component)
c-Myc affinity tag

BBa_E5500
BBa_E5500 Version 1 (Component)
B0030.E0040

BBa_S03831
BBa_S03831 Version 1 (Component)
I712004:I712007

BBa_K1104412
BBa_K1104412 Version 1 (Component)
E0840+I13507

BBa_B1107
BBa_B1107 Version 1 (Component)
B1007 I13507

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_S03832
BBa_S03832 Version 1 (Component)
I712004:I712008

BBa_I12002
BBa_I12002 Version 1 (Component)
Barkai-Leibler design experiment part B (434cI)

BBa_E5501
BBa_E5501 Version 1 (Component)
B0032.E0040

BBa_I7108
BBa_I7108 Version 1 (Component)
R0053.E0840

BBa_S03857
BBa_S03857 Version 1 (Component)
E0840:I718016

BBa_S03855
BBa_S03855 Version 1 (Component)
I718017:E0840

BBa_I12027
BBa_I12027 Version 1 (Component)
434 cI Generator (pBAD/araC promoter)

B&E
BBa_S03359 Version 1 (Component)
B0015 connected to E0420

P&E
BBa_S03353 Version 1 (Component)
PSPO2E connected to E0430

B&I
BBa_S03358 Version 1 (Component)
B0015 connected to I13521

BBa_I7101
BBa_I7101 Version 1 (Component)
R0040.B0032.E0040.B0015

B&TraJ F
BBa_S03357 Version 1 (Component)
B0034 connected to TraJ F

B&TraJ
BBa_S03356 Version 1 (Component)
B0034 connected to TraJ R

BBa_K783020
BBa_K783020 Version 1 (Component)
MoClo converted version of BBa_B0015

GFP.Term
BBa_J04630 Version 1 (Component)
E0040.B0015

BBa_S04306
BBa_S04306 Version 1 (Component)
I12007:F1610

BBa_S03877
BBa_S03877 Version 1 (Component)
B0034:I15008

BBa_S03818
BBa_S03818 Version 1 (Component)
S03817:I12007

pTG262-BB
BBa_I742123 Version 1 (Component)
Multi-host vector pTG262 converted to BioBrick vector

BBa_I11007
BBa_I11007 Version 1 (Component)
pZE2 PLtetO-1 plasmid--MCS2