ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
SpacerSpacer Version 1 (Component) BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_K2066019BBa_K2066019 Version 1 (Component)UNS 3 Sequence, from Torella et al., 2013
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
spaRSpaR Version (Component) BBa_K2066522BBa_K2066522 Version 1 (Component)64BP Spacer, UNS X + first 24 UNS X
BBa_K2066514BBa_K2066514 Version 1 (Component)16bp spacer from UNS X
5xGSBBa_J18922 Version 1 (Component)10aa [GS]x linker
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
spacerBBa_B0040 Version 1 (Component)Spacer.1 (generic)
3xGSBBa_J18921 Version 1 (Component)6aa [GS]x linker
BBa_K2066021BBa_K2066021 Version 1 (Component)UNS 5 Sequence, from Torella et al., 2013
BBa_K2066507BBa_K2066507 Version 1 (Component)UNS 6.1 (Torella et. al 2013)
BBa_K2066020BBa_K2066020 Version 1 (Component)UNS 4 Sequence, from Torella et al., 2013
BBa_K309012BBa_K309012 Version 1 (Component)Unc-54 3' UTR (for use in C. elegans chassis)
BBa_K511003BBa_K511003 Version 1 (Component)UAS-Gal4 Promoter MammoBlock
BBa_J23018BBa_J23018 Version 1 (Component)EN-Ptet-rbs-X-[RFP]-SNP "ORF Expresser"
BBa_K2066503BBa_K2066503 Version 1 (Component)8BP Spacer from UNSX
BBa_J01077BBa_J01077 Version 1 (Component)F plasmid (x-OriT, x-TraJ)
BBa_M13010BBa_M13010 Version 1 (Component)M13K07 gene X
BBa_M13510BBa_M13510 Version 1 (Component)M13KO7 gene X RBS
RFC 37BBa_K245138 Version 1 (Component)x
BBa_J01078BBa_J01078 Version 1 (Component)R plasmid (x-OriT, x-TraJ)
BBa_K322139BBa_K322139 Version 1 (Component)Blue emitting luciferase (from X. luminescens)
"Part X"BBa_K1001753 Version 1 (Component)RFP and RBS behind Lamda Prm Promoter
BBa_K2066023BBa_K2066023 Version 1 (Component)pTet GFP + UNS
BBa_K2066022BBa_K2066022 Version 1 (Component)Constitutive tetR + UNS
BBa_M31110BBa_M31110 Version 1 (Component)[Gene X][BglII]