ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

pT7
BBa_I719005 Version 1 (Component)
T7 Promoter

BBa_I712074
BBa_I712074 Version 1 (Component)
T7 promoter (strong promoter from T7 bacteriophage)

BBa_B0016
BBa_B0016 Version 1 (Component)
Terminator (T7 RNAP specific, T_Phi)

pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

BBa_I712004
BBa_I712004 Version 1 (Component)
CMV promoter

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1150010
BBa_K1150010 Version 1 (Component)
NLS

BBa_I2032
BBa_I2032 Version 1 (Component)
T7 RNA polymerase

BBa_I712059
BBa_I712059 Version 1 (Component)
CMVp - myri - TEVP - T7 RNAP - NLS

BBa_I712058
BBa_I712058 Version 1 (Component)
CMVp - myri - TEVP - GFP

BBa_I712057
BBa_I712057 Version 1 (Component)
myri - TEVP - T7 RNAP - NLS

T7 RBS
BBa_K1362090 Version 1 (Component)
strong T7 RBS

NLS
BBa_J176008 Version 1 (Component)
NLS

BBa_R0182
BBa_R0182 Version 1 (Component)
T7 RNAP promoter

BBa_I712022
BBa_I712022 Version 1 (Component)
T7 RNA polymerase with NLS

BBa_I712069
BBa_I712069 Version 1 (Component)
RBS-T7 RNA polymerase with NLS

BBa_I712055
BBa_I712055 Version 1 (Component)
myri - TEVP - mCherry - NLS

BBa_K1321338
BBa_K1321338 Version 1 (Component)
T7 Expression vector

BBa_K747096
BBa_K747096 Version 1 (Component)
CMV-promoter

NLSmycSTOP
BBa_J176031 Version 1 (Component)
NLS myc stop

BBa_K199118
BBa_K199118 Version 1 (Component)
T7 promoter + RBS + RFP

BBa_I712036
BBa_I712036 Version 1 (Component)
CMVp - CD4 - CUb - T7 RNAP - NLS

NLS+Term
BBa_K165018 Version 1 (Component)
SV40 nuclear localization sequence + ADH1 transcription terminator

BBa_I712056
BBa_I712056 Version 1 (Component)
myri - TEVP - GFP

BBa_R0183
BBa_R0183 Version 1 (Component)
T7 RNAP promoter

BBa_K809602
BBa_K809602 Version 1 (Component)
T7 RNAP

BBa_K115002
BBa_K115002 Version 1 (Component)
RNA thermometer (FourU)

T7pol
BBa_K145001 Version 1 (Component)
T7 RNA polymerase

BBa_I712050
BBa_I712050 Version 1 (Component)
CMV promoter - RBS - T7 RNA polymerase - NLS

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K115001
BBa_K115001 Version 1 (Component)
RNA thermometer (ROSE)

BBa_R0180
BBa_R0180 Version 1 (Component)
T7 RNAP promoter

BBa_R0181
BBa_R0181 Version 1 (Component)
T7 RNAP promoter

BBa_R0085
BBa_R0085 Version 1 (Component)
T7 Consensus Promoter Sequence

BBa_K784047
BBa_K784047 Version 1 (Component)
Theophylline riboswitch + wt T7 RNAP