Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

pBad/araC
BBa_I0500 Version 1 (Component)
Inducible pBad/araC promoter

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_I13453
BBa_I13453 Version 1 (Component)
Pbad promoter

pBAD
BBa_K206000 Version 1 (Component)
pBAD strong

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K426018
BBa_K426018 Version 1 (Component)
Pbad{rbs_pelB>},tn5,{NIS!}b1006Tn5 5

Ara
BBa_K808000 Version 1 (Component)
araC-Pbad - Arabinose inducible regulatory promoter/repressor unit

BBa_K112624
BBa_K112624 Version 1 (Component)
{Pbad}.{rbs_pelB>}.{<phoA>} in BBb

BBa_K228009
BBa_K228009 Version 1 (Component)
AraC protein(reversed sequence) and Pbad promoter

His-Stop
BBa_K133133 Version 1 (Component)
His affinity tag-stop

NLS
BBa_J176008 Version 1 (Component)
NLS

BBa_J44002
BBa_J44002 Version 1 (Component)
pBAD reverse

BBa_J202004
BBa_J202004 Version 1 (Component)
PBAD Mutant#5

amyE 5 IS
BBa_K143001 Version 1 (Component)
5??? Integration Sequence for the amyE locus of B. subtilis

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

rbs.pelB
BBa_K112230 Version 1 (Component)
{rbs.pelB} The pelB leader with native rbs; assembly standard 21

RGD-His-St
BBa_K133036 Version 1 (Component)
RGD-His affinity tag-Stop

BBa_K1150010
BBa_K1150010 Version 1 (Component)
NLS

BBa_K206001
BBa_K206001 Version 1 (Component)
pBAD weak

BBa_K112327
BBa_K112327 Version 1 (Component)
{rbs_pelB>} {< xis>}

BBa_K112900
BBa_K112900 Version 1 (Component)
Pbad

BBa_K112354
BBa_K112354 Version 1 (Component)
{Pbad}{rbs_pelB>}{< phoA!}{< b1006>}

BBa_K426017
BBa_K426017 Version 1 (Component)
Pbad{rbs_pelB>},zf-,SB100x!b1006sleeping_beauty_5

BBa_K426016
BBa_K426016 Version 1 (Component)
Pbad{rbs_pelB>},zf+,piggyBac!b1006piggieBac_5

BBa_K426008
BBa_K426008 Version 1 (Component)
Tn5 5'TR

BBa_K390018
BBa_K390018 Version 1 (Component)
sigA promoter, 5'UTR, and RBS

BBa_K112361
BBa_K112361 Version 1 (Component)
{Pbad}{rbs_pelB>} {< ligase>}{< phoA!}{< b1006>}

BBa_K426015
BBa_K426015 Version 1 (Component)
Pbad{rbs_pelB>}<zf+><piggyBac!b1006piggieBac_5

BBa_K844000
BBa_K844000 Version 1 (Component)
10x-Histidine (10x-His) Tag with double stop codon (TAATAA)

NLS+Term
BBa_K165018 Version 1 (Component)
SV40 nuclear localization sequence + ADH1 transcription terminator

BBa_K112625
BBa_K112625 Version 1 (Component)
{Pbad}.{rbs_pelB>}.{<phoA>}.{<FLAG!}.{b1006}

BBa_K112621
BBa_K112621 Version 1 (Component)
{Pbad}{rbs_pelB>}{<phoA>}.{<AP!}.{b1006}

BBa_K112622
BBa_K112622 Version 1 (Component)
{Pbad}.{rbs_pelB>}.{<phoA>}.{<HA!}.{b1006}

BBa_K112623
BBa_K112623 Version 1 (Component)
Pbad . rbs_pelB> . <phoA> . <myc! . b1006

Tn5R
BBa_J61022 Version 1 (Component)
[Tn5-rev]