SynBioHub

Public

iGEM Feature Libraries
igem_feature_libraries_collection Version 1 (Unknown)
A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Public

Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Unknown)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Public

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Public

BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

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BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss

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BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

Public

mCh
BBa_J176005 Version 1 (Component)
mCh

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pT7
BBa_I719005 Version 1 (Component)
T7 Promoter

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fshPCD
BBa_J176002 Version 1 (Component)
fshPCD

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pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

Public

BBa_J04500
BBa_J04500 Version 1 (Component)
IPTG inducible promoter with RBS

Public

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

Public

BBa_I712074
BBa_I712074 Version 1 (Component)
T7 promoter (strong promoter from T7 bacteriophage)

Public

T7 RBS
BBa_K1362090 Version 1 (Component)
strong T7 RBS

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

VP64
BBa_J176013 Version 1 (Component)
VP64

Public

BBa_K1462502
BBa_K1462502 Version 1 (Component)
PDZ domain + Linker

Public

BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

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BBa_K1092102
BBa_K1092102 Version 1 (Component)
ssDsbA-PDZ Domain

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PLflex
BBa_J176040 Version 1 (Component)
PLflex

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BBa_K1092026
BBa_K1092026 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-Voltage Switch-Dioxygenase

Public

BBa_J176130
BBa_J176130 Version 1 (Component)
PLflex4

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BBa_I15008
BBa_I15008 Version 1 (Component)
heme oxygenase (ho1) from Synechocystis

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BBa_J176132
BBa_J176132 Version 1 (Component)
PLrigid4

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BBa_B0016
BBa_B0016 Version 1 (Component)
Terminator (T7 RNAP specific, T_Phi)

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BBa_K199118
BBa_K199118 Version 1 (Component)
T7 promoter + RBS + RFP

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BBa_K1092101
BBa_K1092101 Version 1 (Component)
ssDsbA-PDZ Ligand

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BBa_K1092010
BBa_K1092010 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-Voltage Switch

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RFC105 A
BBa_K1362414 Version 1 (Component)
N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A

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BBa_K1092008
BBa_K1092008 Version 1 (Component)
ssDsbA-PDZ Domain-Voltage Switch

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BBa_K1092009
BBa_K1092009 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-Voltage Switch

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BBa_K1092024
BBa_K1092024 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-Voltage Switch-RFP N terminus

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RBS-RFP
BBa_K093005 Version 1 (Component)
RFP with RBS

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BBa_K1462503
BBa_K1462503 Version 1 (Component)
SH3 domain + Linker

Public

BBa_K1092025
BBa_K1092025 Version 1 (Component)
T7-RBS -ssDsbA-PDZ Ligand-Voltage Switch-Laccase

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BBa_K1092022
BBa_K1092022 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Domain-FL3 Lgt FL3-Dioxygenase

Public

BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

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BBa_K1092007
BBa_K1092007 Version 1 (Component)
ssDsbA-PDZ Ligand-Voltage Switch

Public

BBa_K1497026
BBa_K1497026 Version 1 (Component)
PDZ-Domain

Public

BBa_K1092023
BBa_K1092023 Version 1 (Component)
T7-RBS-ssDsbA-PDZ Ligand-Voltage Switch-RFP C terminus

Public

BBa_K1321338
BBa_K1321338 Version 1 (Component)
T7 Expression vector

Public

//rbs
rbs Version 1 (Collection)

Public

BBa_K1092012
BBa_K1092012 Version 1 (Component)
RBS-ssDsbA-PDZ Domain

Public

BBa_K1092021
BBa_K1092021 Version 1 (Component)
ssDsbA-PDZ Domain-FL3 Lgt FL3-Dioxygenase

Public

RBS_SpaR
RBS_SpaR Version (Component)

Public

RBS_SpaK
RBS_SpaK Version (Component)

Public

RBS-spoVG
BBa_K143021 Version 1 (Component)
SpoVG ribosome binding site (RBS) for B. subtilis

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