Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K102952
BBa_K102952 Version 1 (Component)
TA2In anti-sense input to BBa_K102952

BBa_K102954
BBa_K102954 Version 1 (Component)
TA6In anti-sense input to BBa_K102904

BBa_K102956
BBa_K102956 Version 1 (Component)
TA8In anti-sense input to BBa_K102906

BBa_K102955
BBa_K102955 Version 1 (Component)
TA7In anti-sense input to BBa_K102905

BBa_K102957
BBa_K102957 Version 1 (Component)
TA9In anti-sense input to BBa_K102907

BBa_K102960
BBa_K102960 Version 1 (Component)
TA12In anti-sense input to anti-terminator BBa_K102910

BBa_K102951
BBa_K102951 Version 1 (Component)
TA1In anti-sense input to TA1 (BBa_K102901)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K102962
BBa_K102962 Version 1 (Component)
TA14In anti-sense input to BBa_K102912

BBa_K102953
BBa_K102953 Version 1 (Component)
TA13n anti-sense input to TA3 (BBa_K102903)

BBa_K102950
BBa_K102950 Version 1 (Component)
TA0In null anti-sense input

BBa_K102959
BBa_K102959 Version 1 (Component)
TA11In anti-sense input to BBa_K102909

BBa_K102958
BBa_K102958 Version 1 (Component)
TA10In anti-sense input to BBa_K102908

BBa_K102961
BBa_K102961 Version 1 (Component)
TA13In anti-sense input to BBa_K102911

BBa_K102912
BBa_K102912 Version 1 (Component)
TA12 plus pause sequence

BBa_K102902
BBa_K102902 Version 1 (Component)
TA2 gate from synthetic algorithm v1.1

phoA
BBa_K112902 Version 1 (Component)
< phoA !

BBa_K102909
BBa_K102909 Version 1 (Component)
TA11 gate from synthetic algorithm v1.1

BBa_K102908
BBa_K102908 Version 1 (Component)
TA10 gate from synthetic algorithm v1.1

BBa_K102906
BBa_K102906 Version 1 (Component)
TA8 gate from synthetic algorithm v1.1

BBa_K102907
BBa_K102907 Version 1 (Component)
TA9 gate from synthetic algorithm v1.1

BBa_K102910
BBa_K102910 Version 1 (Component)
TA12 gate from synthetic algorithm v1.1

BBa_K102911
BBa_K102911 Version 1 (Component)
TA13 gate from synthetic algorithm v1.2

BBa_K102905
BBa_K102905 Version 1 (Component)
TA7 gate from synthetic algorithm v1.1

BBa_K112952
BBa_K112952 Version 1 (Component)
BBb1 assembly vector - C/A

BBa_K102904
BBa_K102904 Version 1 (Component)
TA6 gate from synthetic algorithm v1.1

BBa_K102901
BBa_K102901 Version 1 (Component)
TA1 (THRU gate)

BBa_K102900
BBa_K102900 Version 1 (Component)
TA0 null terminator

BBa_K102903
BBa_K102903 Version 1 (Component)
TA3 gate from synthetic algorithm v1.1

BBa_K102052
BBa_K102052 Version 1 (Component)
TA3In anti-sense input in test harness

BBa_K102095
BBa_K102095 Version 1 (Component)
TA7 gate from synthetic algorithm v1.1

BBa_K112956
BBa_K112956 Version 1 (Component)
BBb1 assembly vector - K/C

BBa_K112955
BBa_K112955 Version 1 (Component)
BBb1 assembly vector - C/K

BBa_K112951
BBa_K112951 Version 1 (Component)
BBb1 assembly vector - A/C resistance

BBa_K112953
BBa_K112953 Version 1 (Component)
BBb1 assembly vector - A/K

BBa_K112950
BBa_K112950 Version 1 (Component)
BBb1 entry vector - specR